Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2878 ATGGGGAGGCCCTCCAAGACGCAGGTTTCCAACGACACAACCTCCGATGAGGAGGAGGAGGACGTCGCCGCCGACAACCACCAGATCGAAGACGACGACGAGGAGCTTCAAGCGGTGGCGCAATCCGCCAGCTCCGACGACGACGATAACTCTCCGGACGAAGCCGCCGCCGATGACGACGACGATAATAAACAGGACGAGAGTAATGTTGATCCTGAAGTTAGCAAGCGTGAGAAGGCCAGATTAAAAGAAATGCAAACGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCTCAAAACGCGACCATTGATGCTGACATGAATAATAGAGGAAAGGGCCGATTGAAGTATCTCCTTCAGCAAACCGAGCTGTTTGCCCATTTTGCCAAGGGTGATCAATCTTCTCAAAAGAAGACAAAAGGAAGGGGTCGCCATGCATCGAAGGTCACTGAAGAAGAGGAAGACGAAGAATACCTAAAAGGGGAGGAAGATGGTTTAGCAAACACACGGCTGGTGTCTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTAATACGATTGTATGAGAACGGTATAAATGGAATTCTAGCAGATGAAATGGGGCTTGGAAAAACCTTGCAAACTATATCTTTGTTAGGCTACTTACACGAGTTCAGAGGAATAACAGGTCCCCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGTCGCTTCTGCCCTGTTTTACGAGCTATAAAGTTTCTTGGCAATCCTGATGAAAGGAAGCACATAAGAGAAGAGTTACTCGTTGCTGGTAAGTTTGATGTCTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAATCTGCTTTAAGGCGATTTAGTTGGCGCTACATTATTATTGATGAGGCACATCGAATCAAGAACGAAAATTCTCTCCTGTCAAAAACAATGAGACTATACAACACAAACTATCGTCTTCTCATTACTGGCACACCATTACAGAATAATCTTCATGAACTTTGGGCTCTTCTCAACTTTCTTTTACCTGAAATATTTAGTTCTGCCGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACAAGAAGTTGTTCAACAACTGCACAAGGTGCTTCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTACCACCAAAAAAGGAAACAATTCTCAAGGTGGGCATGTCACAAATGCAGAAACAGTATTATAAGGCGTTACTTCAGAAGGATCTAGAGGTGGTCAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCGATGCAACTACGAAAATGTTGTAATCACCCATATCTCTTTCAAGGTGCTGAACCTGGTCCACCCTTTACAACAGGAGACCATCTCATTACAAATGCTGGCAAGATGGTTCTTCTGGATAAGTTACTTCCAAAACTAAAAGAGCGTGATTCCAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTTATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGAGGATCGGGATGCTTCCATTGAGAATTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCCTGTTATCTACTCGGGCAGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGCGACTGGAACCCTCAAGTTGATCTGCAAGCTCAGGATCGTGCTCATAGAATTGGCCAGAAAAAAGAAGTTCAAGTTTTTCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGCCGATTAGCTGAACAGAAGACTGTAAATAAAGACGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACTATTACAGATGAAGATATCGACAGAATTATTGCTAAAGGAGAGGAAGCAACTGCTGAGCTTGATGCTAAGATGAAAAAATTTACGGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGATGATGAGAAGGATGAAAACAAATTTGATTTTAAAAAAATTGTGAGTGAAAACTGGGTTGAGCCGCCAAGAAGAGAACGGAAGCGCAATTATTCAGAGTCTGATTATTTCAAGCAAACAATGCGCCAAGGTGCTCCAACTAAACCTAAAGAGCCACGCATACCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGTTACCTCATGCAAACACATCAGAAGAATCAGTTAAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTTGGAGATCCATTAACTGCTGAAGAGTTAGAAGAGAAGGAGCAGTTGCTTGAAGAGGGATTTTCGTCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAGAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACGCAAGAGGAGGTTGAAAGATACGCAAAAGTTTTCAGAGAAAGATACAGGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGTGAGGCAAGAATAACCCGGAAAGATGAAATCATGAAAGCCATTGGGAAGAAGTTGGACCGCTATAAGAATCCTTGGCTAGAATTAAAGATACAATATGGACAAAACAAAGGGAAGCTATACAACGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTCCGCATGTCTCCCTTATTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAAGAACTTACTAGGAGGTGTGACACTCTCATTCGGCTGGTGGAGAAGGAAAATCAAGAATATGATGAGAGGGAAAGGCAAGCTCGTAAAGAGAAGAAACTTGCGGCTAAGAGCATGACCCCGTCGAAGCGTTCCATGTCTAGACAGAACGATAGTCCCTCGGTGAAGAAGCGGAAGCAGCTAACCATGGATGACTATTTAAGCTCGGGGAAGAAGAAAAAATAA 3177 0.4177 MGRPSKTQVSNDTTSDEEEEDVAADNHQIEDDDEELQAVAQSASSDDDDNSPDEAAADDDDDNKQDESNVDPEVSKREKARLKEMQTLKKQKIQEILDAQNATIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIENFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESDYFKQTMRQGAPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFRERYRELNDYDRIIKNIERGEARITRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAAKSMTPSKRSMSRQNDSPSVKKRKQLTMDDYLSSGKKKK* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2878 1058 MobiDBLite consensus disorder prediction 47 67 - -
Vra7g2878 1058 Pfam Helicase conserved C-terminal domain 486 598 IPR001650 -
Vra7g2878 1058 MobiDBLite consensus disorder prediction 14 37 - -
Vra7g2878 1058 SMART sant 834 883 IPR001005 -
Vra7g2878 1058 SMART sant 936 997 IPR001005 -
Vra7g2878 1058 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 639 IPR001650 -
Vra7g2878 1058 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 360 IPR014001 -
Vra7g2878 1058 Pfam SLIDE 891 1001 IPR015195 GO:0003677|GO:0005634|GO:0006338
Vra7g2878 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 681 IPR027417 -
Vra7g2878 1058 SMART ultradead3 179 371 IPR014001 -
Vra7g2878 1058 Pfam HAND 747 830 IPR015194 GO:0003677|GO:0006338|GO:0031491
Vra7g2878 1058 MobiDBLite consensus disorder prediction 1005 1022 - -
Vra7g2878 1058 MobiDBLite consensus disorder prediction 134 155 - -
Vra7g2878 1058 SMART helicmild6 514 598 IPR001650 -
Vra7g2878 1058 Gene3D ISWI, HAND domain 735 833 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vra7g2878 1058 CDD SF2_C_SNF 484 609 - -
Vra7g2878 1058 Pfam SNF2-related domain 196 463 IPR000330 GO:0005524|GO:0140658
Vra7g2878 1058 MobiDBLite consensus disorder prediction 131 161 - -
Vra7g2878 1058 MobiDBLite consensus disorder prediction 1005 1058 - -
Vra7g2878 1058 Gene3D - 922 1025 - -
Vra7g2878 1058 Gene3D - 834 888 - -
Vra7g2878 1058 SUPERFAMILY Homeodomain-like 837 887 IPR009057 -
Vra7g2878 1058 Coils Coil 984 1018 - -
Vra7g2878 1058 MobiDBLite consensus disorder prediction 1034 1058 - -
Vra7g2878 1058 Gene3D - 184 399 IPR038718 -
Vra7g2878 1058 CDD SANT 837 878 IPR001005 -
Vra7g2878 1058 SUPERFAMILY Homeodomain-like 889 1011 IPR009057 -
Vra7g2878 1058 MobiDBLite consensus disorder prediction 1 80 - -
Vra7g2878 1058 Gene3D - 404 696 IPR027417 -
Vra7g2878 1058 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 398 IPR027417 -
Vra7g2878 1058 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 7 1058 - -
Vra7g2878 1058 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 746 836 IPR036306 GO:0003677|GO:0006338|GO:0031491
Vra7g2878 1058 Coils Coil 82 102 - -
Vra7g2878 1058 Gene3D iswi atpase 889 921 - -
Vra7g2878 1058 CDD DEXHc_SMARCA1_SMARCA5 180 400 IPR044754 GO:0005524
Vra7g2878 1058 ProSiteProfiles SANT domain profile. 833 885 IPR017884 -
Vra7g2878 1058 PANTHER SNF2/RAD54 HELICASE FAMILY 7 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2878 Vra-Chr7 48942779 48951675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2878 204 625 RAD5 or RAD16-like Gene Family AT1G02670 27.327 9.91e-44 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra7g2878 SNF2_N 1.7e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2878 K11654 - gmx:100791510 1962.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2878 7 48942779 48951675 Vra7g2878 7 48942779 48951675 ECH
Vra7g2878 7 48942779 48951675 Vra10g1081 10 16523742 16535048 PCT