Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2871 ATGTCAACCTCTAGAACCTCAGATACACCCTTCAAAGGATATGATCCCAACCAAACTCAAATGTGTCTCTCTCTTCTCCAACGCAACACATCTCCTTCTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCAGAGCCAGGAAGGTTCCTTGGGGTCAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATCAGAGACCCCACAACCAAAGAAAGGCATTGGCTTGGCACTTTCGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTCTCCATGAAAGGAAACCAGGCAAGAACCAACTTTGTTTACTCCGACAACATCAACTTCCACACTATACTTTCTCCTGAGGATGTTCAAGTCCAACTTCAACTTCAACCTCTCCTCCCACCTTCACAGTTCCTCTCTAACACCACTCACACCAAACAACCAAACAACCAGAATAGCAGCCTCCCCAAGGTTGTCCACACTTCAAACACTGGAAACCCCTCCCCATTGAACAATGACGCCTTTGTTGAAATTGAAACCACGTATGGGTCGGCTCAGGATGATAGTTTCTTCTTTTCCAGTGATTCCAACTCAGGGTATCTGGAATGCATAGTTCCTGATAACTGTTTCAGACCTGCTGCCTCCAGAAAGAGCAATGTGAGCGATGAAAAGGCTAACACAAACTGGAGTGAGAGTACTAATCATCATCAACAGTACTACTACTCTGAAGAAATGGGAGGAATGGCCTCAAACTTTTCAGAGTTTTGTTATCCAAGTGAAGTGAGTCAAGGATCATGGGATGATCAACAGTCATGGGATTGGAACTGCAGTGAACTTTCAGCCATATTTAAGAACCCATTAAGGGTGGAAAATGGTTGCATGGATGCATTGTACCCGATGAGTGATGATCAGAGTCCTAGTCCAAGTCCAAGTCCAAGCTATGGTATAATGAATGAGTGTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCATTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1023 0.4594 MSTSRTSDTPFKGYDPNQTQMCLSLLQRNTSPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFVYSDNINFHTILSPEDVQVQLQLQPLLPPSQFLSNTTHTKQPNNQNSSLPKVVHTSNTGNPSPLNNDAFVEIETTYGSAQDDSFFFSSDSNSGYLECIVPDNCFRPAASRKSNVSDEKANTNWSESTNHHQQYYYSEEMGGMASNFSEFCYPSEVSQGSWDDQQSWDWNCSELSAIFKNPLRVENGCMDALYPMSDDQSPSPSPSPSYGIMNECASSTTCSPSLPPFGDVDLGYPLF* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2871 340 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Vra7g2871 340 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Vra7g2871 340 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Vra7g2871 340 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Vra7g2871 340 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Vra7g2871 340 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 340 - -
Vra7g2871 340 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Vra7g2871 340 MobiDBLite consensus disorder prediction 33 48 - -
Vra7g2871 340 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Vra7g2871 340 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Vra7g2871 340 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 340 - -
Vra7g2871 340 MobiDBLite consensus disorder prediction 28 48 - -
Vra7g2871 340 MobiDBLite consensus disorder prediction 133 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2871 Vra-Chr7 48891233 48892901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2871 1 209 AP2-EREBP Transcription Factor Family AT5G18560 47.410 1.64e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra7g2871 AP2 1.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2871 - - gmx:100812047 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2871 7 48891233 48892901 Vra10g1088 10 16608060 16609561 PCT