Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2870 ATGGAGCGGTACGGCCGGGCCAGCGAGGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGGCGCCGACGCTGGCATCGAAGAGTCCTCGTGGCAACACGGATTGGCAGCTGCCGAATCGTACCCTCTGCGACCCGATGAGGCTGATTGTATCTATTATTTGAGGACGGGATTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCCCGTGACCGTGCTGCGGTCATCGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGGCAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCATGCAAGTACCACCATCCTAGGCAGGCGGCAGGCGCTGCTACCCCTGTGCCGCTAAATTATTATGGATATCCGTTGCGAGTGGGCGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAATTTGGTGCAACTTGTAAATTCCACCATCCCCAGCCTGCAGGTGTCCAAGTTATTTCACCATCACCGGTTCCCGCAGTTTCACATCTGCCTGTACCGGTACCTTCACCGGTATATCCAACTGTACAGCCCCAATCTGGTCCTTCGCAACAACAATATGGTGTACTTGTTGCAAGGCCTCCTATGCTACCTGGCTCAGTAGTTCAGGGTCCGTATGGGCCTATGGTGGTGTCTCCTGCCATGGTCCCTTTTTCAGGTTGGGGTCCTTATCAGGCTCCTGCAACAACCCCTGTAATGCCATCTAGCTCTGCGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCGCTACCTTCGTCGCCAGCTACTTTTACTGGACCTTATCAGCCTTCTGGTTCCTCAGTTGGTCCTTCAGGTGCTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCCGAATGTCATTATTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCTTGCAGATATCATCATCCACCAGACAAGGGTGCACCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCGCCTTGCACTCATTATACACAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTTAGCTATAGTCCATCTGCCTCTTCCCTGGCCGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATCGGTACTCTTGCTCCGTCATCTTCATCCTCAGAGTTGCGGCCTGAACTTGGTGGAGGAGTCAGTAAGGAGTCTGTTTCGTCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTTGGACCCATTTCTCATTCAGGCACCCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACTTCAAGCTAA 1452 0.522 MERYGRASEGSQSDPSPEWTVAGADAGIEESSWQHGLAAAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGAATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVISPSPVPAVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATTPVMPSSSASNVGSTQLYGITPLPSSPATFTGPYQPSGSSVGPSGAIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGGGVSKESVSSRMSSMSTSTGSVGLTLSSVGPISHSGTQPSAQSSSSSATTSATTSSTVSHTSS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2870 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Vra7g2870 483 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Vra7g2870 483 PANTHER PROTEIN PHOSPHATASE RELATED 1 469 - -
Vra7g2870 483 Gene3D - 304 381 - -
Vra7g2870 483 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 469 - -
Vra7g2870 483 Gene3D - 127 175 - -
Vra7g2870 483 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Vra7g2870 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Vra7g2870 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Vra7g2870 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Vra7g2870 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 377 IPR000571 GO:0046872
Vra7g2870 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Vra7g2870 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Vra7g2870 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Vra7g2870 483 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Vra7g2870 483 MobiDBLite consensus disorder prediction 405 483 - -
Vra7g2870 483 SUPERFAMILY CCCH zinc finger 307 332 IPR036855 GO:0046872
Vra7g2870 483 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Vra7g2870 483 MobiDBLite consensus disorder prediction 1 21 - -
Vra7g2870 483 Gene3D - 46 126 - -
Vra7g2870 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Vra7g2870 483 MobiDBLite consensus disorder prediction 426 483 - -
Vra7g2870 483 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Vra7g2870 483 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Vra7g2870 483 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Vra7g2870 483 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Vra7g2870 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Vra7g2870 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2870 Vra-Chr7 48881128 48885961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2870 1 449 C2H2 Transcription Factor Family AT5G18550 56.710 5.41e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra7g2870 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2870 - - gmx:100778426 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2870 7 48881128 48885961 Vra7g2870 7 48881128 48885961 ECH
Vra7g2870 7 48881128 48885961 Vra10g1089 10 16610948 16623212 PCT