Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2869 ATGAAGAAGTTCTCAACCCTAAGAATCCTTCACCATCGTCATTCTCTTCTCAATCTTAATCCCAATCTCAATCTAAATCCTTCCTTCTCCGTCTGCTTCAATTTCAATTTCGCTACCATTCCCCAATCTCAGTCCTTCGTTGTCTCCTACCTCGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCTCGCTACCTCCGTTTCAAGAGTTCTCAGAAGCCCGACTCCGTTATAGCTTTCCTCTCTGCGCATGGCTTCTCCGTCTCTCAAATCCACACCGTCGTCAAACGGGAAAGTCGCATCCTCCAGTGCAACCCCGACAAAGTCCTCCTCCCCAAGTTCCAGTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAATCCACATGATCACCGCCGGACCCCGATTCCTCTTAGGCAGCCTCAACAACAACATTGTCCCCGCCTATCACTTGGTCAGAAGTTTCATCGACTCTGACAAGCAAGTCATAACCTGTCTCAGGCGAAACTTCTCCTCCATTGCCGACAGTCGCGTATCTCCCAACGTCCAACTTCTCCTCGATAATGGCGTCAAACGGTCCAGCATCGCTATGATGCTCTCCATGCGGTCCTCTATCCTCTGCTCCTATAAGCTGTCCCACACAATTTGTGAACTGAAAGAAATGGGGTTTGACACTTCGAAAACCACCTTCGCCGTGGCCATGATGGCCAAAAGGACTGTGAATAAAGCCAAGTGGGTTGAGAAGGTTGAGGTTTTTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGAGGCGTTTAAGAAGCTTCCTTATTGCATGTTGAACTCCCAAGAGAAGATTGATGCCGTATTTAGCTTCTGGGTTGAGGTGTCAGGGTATAGCTCTTTGGAGCTTGTTAAGTATCCTGTTATTTTTCAGCTGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAAGTTTCTTGAGAAGGAAGGATTGAGGAAAAAGGGTGCAAGCTATGCCACGCCTCTACTCCCCAAGGAGAATGTGTTTCTGAAGAAGTTTGTCTATGCTTTTGAAAACCATTCTTCTCAGTTGTTGAAGATATATCAGAAAAGTATGAACCAAGGGAATACTACAGAGGAGAGTAGAACAATCATGTCAACATTTTAA 1170 0.4803 MKKFSTLRILHHRHSLLNLNPNLNLNPSFSVCFNFNFATIPQSQSFVVSYLVSTCGFSPESALSASRYLRFKSSQKPDSVIAFLSAHGFSVSQIHTVVKRESRILQCNPDKVLLPKFQFLRSKGASSADIIHMITAGPRFLLGSLNNNIVPAYHLVRSFIDSDKQVITCLRRNFSSIADSRVSPNVQLLLDNGVKRSSIAMMLSMRSSILCSYKLSHTICELKEMGFDTSKTTFAVAMMAKRTVNKAKWVEKVEVFKKWGWSEEHVLEAFKKLPYCMLNSQEKIDAVFSFWVEVSGYSSLELVKYPVIFQLSLPKRIVPRSLVLKFLEKEGLRKKGASYATPLLPKENVFLKKFVYAFENHSSQLLKIYQKSMNQGNTTEESRTIMSTF* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2869 389 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 375 - -
Vra7g2869 389 Pfam mTERF 219 335 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 Pfam mTERF 82 288 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 PANTHER CGI-12 PROTEIN-RELATED 21 375 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 Gene3D Transcription termination factor 3, mitochondrial 144 364 IPR038538 -
Vra7g2869 389 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 SMART mt_12 164 195 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 SMART mt_12 131 163 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 SMART mt_12 7 58 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Vra7g2869 389 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2869 Vra-Chr7 48860252 48861560 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra7g2869 mTERF 8.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2869 K15032 - gmx:102667698 357.066