Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2867 ATGTTCAGTCCAAGCGTGGATTCTGCGAGGGATGCTGGTGGTGTGGCAGCGGCTGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGGGGAAGAAGTGTGTATCTAAGCGGTTCTTTCACACGGTGGTCTGAACTTCTACAAATGTCGCCAGTGGAGGGCTGCCCAACTGTTTTTCAAGTCATTCATAGCTTGGCCCCTGGTTATCATCAGTACAAGTTTTATGTTGATGGGGAATGGCGGCATGATGAGCATCAACCCTGTTTATCTGGAGAATATGGGATAGTTAATACTGTTTTTTTGGCTACTGATCCTTTTGTACCTCTTTTAACTCCAGACACGGTTTCTGGATCTAACATGGATGTGGATAACGAGGCTTTTCGACGCATGGCCCGATTGACAGATGGTACATTAAGTAATGTGTTGTTACCAAGGATATCAGATGCTGATGTACAGACCTCTCGTCAGCGTATTTCTTCATTCCTATCTTCGTGCACAGCATATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTCGATCTGCCTGTGAAACAGGCATTCCACATATTGCATGAGCAGGGAATTCCCATGGCTCCTCTTTGGGACATCTGCAAGGGGCAGTTTGTTGGAGTTCTCAGTGCCTTGGATTTTATTTTAATTTTAAGAGAGCTTGGAAATCATGGGTCCAATCTGACCGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAATGGACAGCATTTACACAAGGTTTTATCCGTGCAGGGCCATATGATAATTTGAAAGAGATTGCTCTGAAGATCCTGCAAAATGGAATTTCAACAGTTCCTATTATTCATTCATCTTCTGAAGATGGCTCATTTCCCCAGCTGCTACATCTTGCTTCACTTTCAGGAATCCTTAAATGCATTTGCAGGTATTTTAGGAATTGTTCTAGTTCATTGCCCATACTTCAACTTCCAATCTGTGCAATCCCTGTGGGTACGTGGGTGCCCAAAATTGGGGAGCCGAATTGCCAGCCTCTAGCAATGTTGAGACCAAATGCTTCGCTTACTTCAGCCCTAAACTTATTAGTTCAAGCTCAAGTAAGTTCAATTCCAATAGTTGATGACAGCGACTCATTGCTGGATATATATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAACTTATACACATATTAATCTTGATGAAATGACGGTTCATCAGGCATTGCAACTAGGGCAAGATTTTTACAGTTCTTTCGAACCAAGAAGTCAAAGATGTCAGATGTGTTTGCGAACTGATTCTCTGCATAAAGTGATGGAACGTTTGTCACAACCAGGTGTGAGGCGGCTAGTCATTGTGGAAGCTGGCAGCAAGCGGGTAGAAGGCATCATATCACTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1443 0.4352 MFSPSVDSARDAGGVAAAVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQVIHSLAPGYHQYKFYVDGEWRHDEHQPCLSGEYGIVNTVFLATDPFVPLLTPDTVSGSNMDVDNEAFRRMARLTDGTLSNVLLPRISDADVQTSRQRISSFLSSCTAYELLPESGKVVTLDVDLPVKQAFHILHEQGIPMAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKWTAFTQGFIRAGPYDNLKEIALKILQNGISTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGEPNCQPLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMTVHQALQLGQDFYSSFEPRSQRCQMCLRTDSLHKVMERLSQPGVRRLVIVEAGSKRVEGIISLSDIFKFFLG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2867 480 SMART cbs_1 176 225 IPR000644 -
Vra7g2867 480 SMART cbs_1 348 396 IPR000644 -
Vra7g2867 480 SMART cbs_1 430 479 IPR000644 -
Vra7g2867 480 CDD E_set_AMPKbeta_like_N 22 100 - -
Vra7g2867 480 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Vra7g2867 480 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 480 - -
Vra7g2867 480 SUPERFAMILY CBS-domain pair 347 479 IPR046342 -
Vra7g2867 480 ProSiteProfiles CBS domain profile. 342 401 IPR000644 -
Vra7g2867 480 ProSiteProfiles CBS domain profile. 427 480 IPR000644 -
Vra7g2867 480 SUPERFAMILY E set domains 21 102 IPR014756 -
Vra7g2867 480 Gene3D - 147 320 IPR046342 -
Vra7g2867 480 Pfam Glycogen recognition site of AMP-activated protein kinase 21 100 IPR032640 -
Vra7g2867 480 Pfam CBS domain 433 479 IPR000644 -
Vra7g2867 480 Pfam CBS domain 348 392 IPR000644 -
Vra7g2867 480 Gene3D Immunoglobulins 18 101 IPR013783 -
Vra7g2867 480 SUPERFAMILY CBS-domain pair 156 317 IPR046342 -
Vra7g2867 480 Gene3D - 328 480 IPR046342 -
Vra7g2867 480 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2867 Vra-Chr7 48823398 48830820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2867 - - gmx:100810976 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2867 7 48823398 48830820 Vra7g2867 7 48823398 48830820 ECH
Vra7g2867 7 48823398 48830820 Vra5g0157 5 1265103 1274047 PCT