Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2864 ATGATGGTGGACAATGTCGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATCAGGGAACAAGACCGTTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAATGTGTGTCGGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGAAAGGAGAGGAGGAAGACCGTGAACGGAGACGATATATGCTGGGCCTTAGCTTCCCTTGGTTTTGATGACTATGCAGACCCATTGAGAAGGTATTTGCACAGATATAGAGAACTAGAACTAGATAGAACAGCCATCCAAGAGAGAGGAAATAGCCCCTCTAAAGACAAGGATGCTGAATTCTGA 399 0.4461 MMVDNVGGSSSNPENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALASLGFDDYADPLRRYLHRYRELELDRTAIQERGNSPSKDKDAEF* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2864 132 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra7g2864 132 Gene3D Histone, subunit A 12 131 IPR009072 GO:0046982
Vra7g2864 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Vra7g2864 132 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Vra7g2864 132 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Vra7g2864 132 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Vra7g2864 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra7g2864 132 Coils Coil 100 120 - -
Vra7g2864 132 MobiDBLite consensus disorder prediction 1 21 - -
Vra7g2864 132 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 11 127 - -
Vra7g2864 132 SUPERFAMILY Histone-fold 21 129 IPR009072 GO:0046982
Vra7g2864 132 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2864 Vra-Chr7 48767649 48768047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2864 18 125 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.148 1.89e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra7g2864 CBFD_NFYB_HMF 4.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2864 K08065 - gmx:100786046 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2864 7 48767649 48768047 Vra7g2864 7 48767649 48768047 ECH
Vra7g2864 7 48767649 48768047 Vra5g0153 5 1224504 1224872 PCT