Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2863 ATGAGCACCATTCTCCGCCACCGCCTCAGGCTAAGTCAGACACGTGTTCTTTATTGCTTCCCCAAATTTCTTTATTCCCAACCCTTTCACTTTTTCTCAACAACCACTTCTGAGCCCTGCGCCTTCACCTTATCCTATCTCACCAACACCTGCGGCTTCTCGCAAGAGGTCGCACTTAAACTATCCAAACGACTTCGTTTCGAAACCGCCGAAAAACCTGATTCCGTCTTATCTTTCTTCCGAACCCACGGTTTCTCCACCTCCCAGATCTGCCGCATCTTCTACCAAGCCCCCGAGCTCTTGGTATGCGACCCCACCAAAAGGCTTCTCCCCAAATTCCAATTCTTAGCCTCTAAAGGCGCTTCTCCCTCCGACACCATTCTAATCGTCTCCAAGGCCGCCCGCTTCCTTCGTTACAGTCTCAACAGCCATATCATTCCCATCTTCGAACTCATCCGAACGTTCTTGCCCTCCGACCTAAAAGCCCTCGCTGTTTTCATCGCCTGTCCCAATTTCATCGGAGACTGTCGTGTTGCCTCCAACGTTCAGATGTTGCTCGACACCGGAGTAACGCACACTGGAATTCGCTACTTACTCTGCTCTCGGCCTTCGGTTCTGTGCTCCGACCTTAGACCCGCTATTGAGGAAGTGAAGTTGTTGGGGTTTGACCCTGTGAAGCTGAGCTTCACTTTGGCCCTTCTGGCTAAAAAGGCTGTTTCGAAACCTCTTTGGAATGCCAAAGTCGAAATCTTGAAGAAATGGGGTTGGTCCGAGGATGATATTTGTGTTGCTTTTAAGAACCAGCCTAATATTATGCTGCGCTCCAAGGAAAAACTTAATGCAGTGATGGGGTTTTGGGTTGGTCAGCTTGGTTGGGATCACTCCGTGCTTATTTCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTGGCACCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGATTGGTGAAGAAAAGTGCTAGCTTGGGCACACCTTTTGTTTTGTCTGATGAACGGTTTCTGCAAAAGTACGTAAAACGTTTTGAGGAGGAAACTCCCAGGTTACTAGAGCTATATCAGGCGGCACAGGAAACGTATTTTGTTGCAAATCAAGAACAGTTGCGCACATTTTCCTTCTTCATTTCATCATTAACACTGTTGCAAGCTTCCACATCCTTTCAAGAGTACCAATCAAGTGATGTTTCAACTGCTATATCACTTCTTTTTCTTGGAGTATTTTTGGGAGCCCCAAGTGCAAAGGAGTTTGGAATTGGATTTGAAAATCATTTGGTAATCGATGAAGGAGAAGGAATGAAATCAGAGAATCCCATGTTCAAAATTTACCGCCGCACAACCCTTGGTTGTGCCAAGTTTTTCGAATTGACAACCCTAAAACGGAACCCTCTTTTCCAATTCTGCAGGGCCACCTCCACCTCCAACTTATCCTCTTTCGTGGTCTCGTACCTCGTCAACAACTGTGCCTTCTCCCAAAAAACCGCTCTCAAAGCTTCCCGCAAACTTCATTTTTCGAAACCCCAAAAGCCTGATTCTGTTCTCTCCTTCTTCCGAAACCACGCCTTCTCCAACTCTCGTATATCTCATATCCTTCAAAGAGTGCCCCGGTTACTTTCATGCAATACCCAAAAGCTTGATAGTGGAGTTCCCGGTTCAAATATTGTTAAGTTGCCCGAGAGATGGTGTCGTCTACTCTACTTTGGCGACATTTCAAAGACAGTTCATGAGTTGAAGCAAATGGGCTTCGATGCTTCGCTTTCAACATTCTGCATAGCGTTGGTTGCCAAAAGAAACCTAAGCGAAAGCAACTGGGCCGAGAAGATTCACACTTATAAGAGGTGGGGTTGGTCCCAAGAACAAGTTCTTCTAGCATTTAGGAGGCAGCCTTATTGTATGCTGTCATCCTGTGATAAAATTAATGCCGTGATGAGTTATTGGGTGGAGCAGGCAGGCTTCAATTCTGTGGACCTTGTCAAAACTCCTGGAATTTTCTTACTTAGTCTCCGAAAAAGGATTGCTCCGAGGGCTTGTGTCTTGAAGTTTCTTGTCTCAAAAGGTCTGCTACGGAAGGATGCAAGCTTAACGAGACCATTTGTTCTGACTGAGAAGTTGTTCCTGGAAAACTACGTAAGACGTTTTAGGGAGGATTCTTCTCATCTGTTAAAGCTGTACACAGAACATGAGTCTTGGAAATGA 2226 0.4609 MSTILRHRLRLSQTRVLYCFPKFLYSQPFHFFSTTTSEPCAFTLSYLTNTCGFSQEVALKLSKRLRFETAEKPDSVLSFFRTHGFSTSQICRIFYQAPELLVCDPTKRLLPKFQFLASKGASPSDTILIVSKAARFLRYSLNSHIIPIFELIRTFLPSDLKALAVFIACPNFIGDCRVASNVQMLLDTGVTHTGIRYLLCSRPSVLCSDLRPAIEEVKLLGFDPVKLSFTLALLAKKAVSKPLWNAKVEILKKWGWSEDDICVAFKNQPNIMLRSKEKLNAVMGFWVGQLGWDHSVLISSPTLFSYSLEKRVAPRALVVQYLLSKGLVKKSASLGTPFVLSDERFLQKYVKRFEEETPRLLELYQAAQETYFVANQEQLRTFSFFISSLTLLQASTSFQEYQSSDVSTAISLLFLGVFLGAPSAKEFGIGFENHLVIDEGEGMKSENPMFKIYRRTTLGCAKFFELTTLKRNPLFQFCRATSTSNLSSFVVSYLVNNCAFSQKTALKASRKLHFSKPQKPDSVLSFFRNHAFSNSRISHILQRVPRLLSCNTQKLDSGVPGSNIVKLPERWCRLLYFGDISKTVHELKQMGFDASLSTFCIALVAKRNLSESNWAEKIHTYKRWGWSQEQVLLAFRRQPYCMLSSCDKINAVMSYWVEQAGFNSVDLVKTPGIFLLSLRKRIAPRACVLKFLVSKGLLRKDASLTRPFVLTEKLFLENYVRRFREDSSHLLKLYTEHESWK* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2863 741 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 37 367 - -
Vra7g2863 741 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 483 554 - -
Vra7g2863 741 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 555 737 - -
Vra7g2863 741 Gene3D Transcription termination factor 3, mitochondrial 176 358 IPR038538 -
Vra7g2863 741 Gene3D Transcription termination factor 3, mitochondrial 43 175 IPR038538 -
Vra7g2863 741 Gene3D Transcription termination factor 3, mitochondrial 489 732 IPR038538 -
Vra7g2863 741 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 664 698 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 632 663 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 SMART mt_12 538 593 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 PANTHER CGI-12 PROTEIN-RELATED 555 737 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 PANTHER CGI-12 PROTEIN-RELATED 37 367 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 PANTHER CGI-12 PROTEIN-RELATED 483 554 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 Pfam mTERF 608 715 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 Pfam mTERF 245 346 IPR003690 GO:0003690|GO:0006355
Vra7g2863 741 Pfam mTERF 77 214 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2863 Vra-Chr7 48756597 48761363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vra7g2863 mTERF 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2863 K15032 - gmx:102667698 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2863 7 48756597 48761363 Vra5g0152 5 1216470 1218258 PCT