Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2862 ATGCTAGAAACACCTATAGATTGCCAATTTATGACTTTTGCCGCTTTTAACAAACATTTCAAATTGCATGTGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCATGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTCGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGATTAAGGTGGATTAATTACCTTAGGCCANATTTGAAGAGAGGGGCGTTCTCACAGCAGGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAATAGGTGGTNGCAGATCGCTGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACATCAACCCCTCTCTGAGGTTGAAAACAAACTCTCTTTGGTCTCAATCTAA 495 0.4364 MLETPIDCQFMTFAAFNKHFKLHVGRHSCCYKQKLRKGLWSHEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPXLKRGAFSQQEENSIIELHAVLGNRWXQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEVENKLSLVSI* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2862 164 CDD SANT 92 132 IPR001005 -
Vra7g2862 164 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 139 IPR017930 -
Vra7g2862 164 PANTHER HOMEODOMAIN-RELATED 25 158 - -
Vra7g2862 164 SMART sant 36 86 IPR001005 -
Vra7g2862 164 SMART sant 89 137 IPR001005 -
Vra7g2862 164 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Vra7g2862 164 PANTHER MYB DOMAIN PROTEIN 55 25 158 - -
Vra7g2862 164 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 88 IPR017930 -
Vra7g2862 164 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Vra7g2862 164 CDD SANT 40 84 IPR001005 -
Vra7g2862 164 Gene3D - 91 160 - -
Vra7g2862 164 Gene3D - 34 90 - -
Vra7g2862 164 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Vra7g2862 164 Pfam Myb-like DNA-binding domain 90 134 IPR001005 -
Vra7g2862 164 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2862 Vra-Chr7 48754469 48755914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2862 24 157 MYB Transcription Factor Family AT1G09540 85.821 6.10e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g2862 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2862 K09422 - vra:106766539 345.51