Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2850 ATGCAATTTCATTGTGATACGGATTCTCCACTTGTTGCCGCACACACACACATACGCCACGCTAAACGCAACCAAATATATTTTCTTTCTCTGCCCTTTCGGGATTTGCTAAGTCACACACTCTCTTGTATATATACTTCCACTCTCACTCACTCCTTTCTCTCTTCTATCATACCCGCATTCTCACAATCCTCCCTTTCTTTTTCCCTTCCCTCTTCACTTCTCATTCATCTATTGGGTTCCTCGCTGGGTATAATGCTTAGTCCTGCTGAAGGAGAACTTAAAATAAGTTTTGGCTATAAATGCAACAGTGATAAAGGTATTCCCTGTGAGGTTGCCAGTGGCTGCAAAATCCTTCCCGGAGTACGTAGAACCAGTAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCGAATGCTACATTAGCCAACACAAACATCTGCAATGGTAAAATAGGTGAAGAAATCCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCATCTTCCCTCCCAAGTAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTACAAGTGACATCCTCGAATATGACTCTTGCACGTTAAAATCAATGAGCGATCCTTCCAGAAGTGAAGGTTTTCTTAATGTTAAGGAAGTTCAAGTAGCAGGAGGAGCTGCCGGTGAAGACAGAGTTCAAGCAGTTTGTTCAGAAGAAAACGGGTGGCTATTCTGTGCAATTTATGATGGCTTTAATGGAAGAGATGCAGCCGATTTTCTGGCTGGTACCCTGTATGACACCATCATATCATACTTTAATAAGTTAATCGAGGAATTGGAGCCAGGATCCATCAGAGCTTATAATGATGGGGGCTTGGATGAATCCCTGCAATGTAAGTTGAATGAAAGTCTTATTTATCACGAAGATCAATCTATGGCAAGATTTAAAGGAATAAATGATTCTAATCATGGATGTTATGTATCTACTAAGTCAGAACTATCATGTGATCCATTTTCACAAGGGGTACTTGATATCCTTGAACGTGCTATTAGTCAGGCAGAGAATGATTTCCTGTACATGGTGGAGCGGGAAATGGAGGAACGTCCTGATCTAGTTTCTATTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTTGGTGACAGCAGAGCAGTTTTGGCAACCTGCATTACAGGTTGCCGAATGGATAAGAGTGAGAGACTGAAGGCTATACAGCTTACAGATAATCACACTGTTGATAATGAAGTTGAAAGAGCTAGACTTCTGGCCGAACATCCCGATGATCCCAGGATCGTTGTAGCAGGAAAAGTGAAAGGGAAACTCAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAATTTGAATGATGCTTTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATACATATCCACTCAACCATCACTGAATGTCCATAGAATCTCAAGCTCCGATCAATTTGTGATAGTAGGGAGTGATGGTTTATTTGACTTCTTCAGCAACGATGAGGCAGTAAAGCTTGTAGAGTCTTATATCTGGAGCACCCCTTTTGGTGATCCAGCAAAGTTTCTGATAGAGCAGCTTGTGGCTAGAGCAGCTGTTTCTGCCGGTTTAAGCATGGAAGAGTTGATGAACATTCCAGCTGGAAGGAGAAGGAAGTACCATGACGATGTGACCGTAATTGTGATCATGCTTGGGATGAATCAACGGACTTCAAAGGCATCAACTTGCATTTGA 1821 0.419 MQFHCDTDSPLVAAHTHIRHAKRNQIYFLSLPFRDLLSHTLSCIYTSTLTHSFLSSIIPAFSQSSLSFSLPSSLLIHLLGSSLGIMLSPAEGELKISFGYKCNSDKGIPCEVASGCKILPGVRRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPSSLSYLSCSPSTTSDILEYDSCTLKSMSDPSRSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFNKLIEELEPGSIRAYNDGGLDESLQCKLNESLIYHEDQSMARFKGINDSNHGCYVSTKSELSCDPFSQGVLDILERAISQAENDFLYMVEREMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCITGCRMDKSERLKAIQLTDNHTVDNEVERARLLAEHPDDPRIVVAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYISTQPSLNVHRISSSDQFVIVGSDGLFDFFSNDEAVKLVESYIWSTPFGDPAKFLIEQLVARAAVSAGLSMEELMNIPAGRRRKYHDDVTVIVIMLGMNQRTSKASTCI* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2850 606 SMART PP2C_4 213 591 IPR001932 -
Vra7g2850 606 PANTHER PROTEIN PHOSPHATASE 2C 88 605 IPR015655 GO:0004722|GO:0006470
Vra7g2850 606 SUPERFAMILY PP2C-like 236 594 IPR036457 -
Vra7g2850 606 Gene3D - 192 602 IPR036457 -
Vra7g2850 606 CDD PP2Cc 235 591 IPR001932 -
Vra7g2850 606 Pfam Protein phosphatase 2C 335 548 IPR001932 -
Vra7g2850 606 ProSiteProfiles PPM-type phosphatase domain profile. 222 593 IPR001932 -
Vra7g2850 606 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 88 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2850 Vra-Chr7 48652547 48656157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2850 92 606 PP2C-type Phosphatase Gene Family AT3G16560 62.956 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2850 - - vun:114178627 1061.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2850 7 48652547 48656157 Vra7g2850 7 48652547 48656157 ECH
Vra7g2850 7 48652547 48656157 Vra5g0139 5 1140674 1144475 PCT