Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2848 ATGCAGAACGAGGAGGGAAAACTCACCGAGTTATACGTTCCTAGGAAATGCTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATGAACATTGGCCATTTGGATGAGAATGGTATCTACAATGGTCATTTTTCCACGTTTGCTCTCTGTGGTTTCGTTCGAGCACAGGGCGAGGCTGACAGTGCACTAGATAGGTTATGGCAGAAGAAGAAGACAGAAGTTAAACAACACTAG 249 0.4578 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQMNIGHLDENGIYNGHFSTFALCGFVRAQGEADSALDRLWQKKKTEVKQH* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2848 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Vra7g2848 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vra7g2848 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vra7g2848 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vra7g2848 82 Gene3D - 1 81 IPR038579 -
Vra7g2848 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2848 Vra-Chr7 48616569 48617897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2848 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.488 2.59e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2848 K02971 - gmx:100817753 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2848 7 48616569 48617897 Vra7g2848 7 48616569 48617897 ECH
Vra7g2848 7 48616569 48617897 Vra5g0138 5 1138251 1139739 PCT