Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2824 ATGGAAAACGATGAAGCTAAAGAAATCGAAGCGAATGATTTCGCGCTTAGCGGCAAGATAATGCTATTCGCCATCGTCGTTCTCTTCGTCATCATCGTCATAATGCTTTGCCTCCACGTCTACGTCCGCTGCACCCTCCTTCGAGCTCGCCGCCGGCAACAACTTCCCCGAAGAAGCAACCCCCCGCAGTTCGTATTCTACATCGACCCCGCCGCCCGCATTGCTCTCACCTCGAGCGGCCTCCACCCCTCCGTCATCTCGACGCTCCCGGTCTTCACCTTCTCCGATTCCATCCAAAAATCGGAATGCGCGGTGTGCTTGTCGGAGTTCGAGAACGGGGAAACGGGTCGGGTCTTACCCAAATGCAACCATAGTTTCCATACTGAGTGCATCGACATGTGGTTCCAGTCCCACACCACTTGTCCGCTTTGCAGGGCGCCTGTGGAGGCCATTTCCGAGCAAGAAACTCGATCCGAGGTGGCTGTTGTTGTGTGTGAACCTGAAACGGTTGGGGAAGAGGTTGGTTCTTCTTCTTCTGCATTGCGTAACGAGAGCTTGGGGAGTGAGACGGAGTCTTCATTTGTTTCTCCGGTGAGTCGGATAGCGTCGTTGAAGAGAATTCTGAGTAGAGAGAAAAAGGGAAGCGTTTCGGGGGGTGTGGTGGGAGGGTGCAGCTCCACAACCACCGAGTTAGATGCAGAACGGGAAGAGTGTTACTTGGGGAGTTGTTCATGA 735 0.5401 MENDEAKEIEANDFALSGKIMLFAIVVLFVIIVIMLCLHVYVRCTLLRARRRQQLPRRSNPPQFVFYIDPAARIALTSSGLHPSVISTLPVFTFSDSIQKSECAVCLSEFENGETGRVLPKCNHSFHTECIDMWFQSHTTCPLCRAPVEAISEQETRSEVAVVVCEPETVGEEVGSSSSALRNESLGSETESSFVSPVSRIASLKRILSREKKGSVSGGVVGGCSSTTTELDAEREECYLGSCS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2824 244 SUPERFAMILY RING/U-box 89 151 - -
Vra7g2824 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 151 IPR013083 -
Vra7g2824 244 SMART ring_2 103 144 IPR001841 -
Vra7g2824 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 222 - -
Vra7g2824 244 Pfam Ring finger domain 102 145 IPR001841 -
Vra7g2824 244 PANTHER RING-H2 FINGER PROTEIN ATL64 3 222 - -
Vra7g2824 244 CDD RING-H2_EL5_like 102 145 - -
Vra7g2824 244 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2824 Vra-Chr7 48413935 48415211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2824 14 235 Rapid Response to Elicitors AT3G16720 40.580 1.02e-49 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2824 - - gmx:100799137 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2824 7 48413935 48415211 Vra7g2824 7 48413935 48415211 ECH
Vra7g2824 7 48413935 48415211 Vra5g0113 5 930612 932056 PCT