Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2823 ATGGCGAATGGATTCGATAGTGTTCATGAGAGGAAGAAGAAGCTCGCAGTTTTGAGCGTCTCTTCCGTCCTCCTGATCGCGATGGTTGCCGCGGTGGCCGTTGGCATAAATGACGACGTCCATGGCCACCACATGGAAGAAGAAGGCGACGGCAGCATCGTGAAATCTCAGAGGAGCGCCAACATGATATGTCAATCGGCCGAATACAAAGAAACCTGCCACAAGAGTCTCGCCAATGCTTCCGAAGATAACCCCGACCTGAAGCAACTTATCATCACCGCCTTCAATGCCACCGCTCAGGAGATTCACAGCAAAATTGAAAACTCAACGCTGTACCACGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGACATTTGCAAGGAAGTACTAGGTTACGCTGTGGATGATATAAACGAATCCGCTGCGACTTTGGAGAAGTTTGACTTGAACAAGATGGACGATTACGCCTATGACCTCAAGGTTTGGATCTCGGGTACCATTGCCCACCAGCAAACATGCTTGGACGGGTTCGAGAACACGACCACCGAGGCTGGGAAGACAATAGCTAAGGTTCTGAACACGTCATTGGAGATGAGCAGAAACGCGCTGGACATAGTGAACGGTGTGTCGTCTCTCTTCAAGGGTCTCAACTTGACCTCCTTCGGCTCCAGTCACAGGAAGCTTCTCGCCGAAGAAACTTTGGTTGATGGGTTCCCATCGTGGGTGAGTGAAGGGCAGAGAAAAATTCTGGAATCTACTGATATCAAACCAAATGTGGTGGTGGCTCAGGATGGGAGTGGACAGGTGACCACAATCCACGAGGCTCTCAAACTGGTGCCTAAGAAGAACAAGACGCCTTTTGTGATTTACATCAAGGCCGGTGTCTACAGGGAGTATGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGCGATGGCCCCACCCTCACCAGAATCACCGGCGATAAAAACTACGTCGATGGTTTCCAAACCTACAACACTGCAACCGTCGGTGTGAACGCTGCAAACTTCATGGCGAAGAACATTGGGTTCGAGAACACGGCAGGAGCGGAGAAGCACCAAGCTGTGGCTCTGAGGGTAACAGCTGACAAGGCAGTGTTCTACAACTGTCACATGGACGGCTACCAAGACACCCTCTACACCCAGTCCCAGCGCCAGTTTTACCGCGACTGCATTGTCACCGGCACCATCGACTTTGTCTTCGGGGACGCCGTCGCCGTTTTCCAGAACTGCAAGTTCATCGCGAGGAAGCCAATGGAGAACCAGCAGTGCATGGTGACCGCCGGCGGAAGGACCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATCTTCACCGGCGAGGCGGAGCTGAAAGCCGTGACCCCGAAGATCGCGTACCTCGGGAGGCCCTGGAGGCTCTTCTCGAAGGTGGTGATAATGGACTCCGAAATCGACGACATCTTCGCTCCCGAAGGGTACATGCCCTGGATGGGAAGCGCCTTCAAAGATACCTGCACCTACTACGAGTTCAACAACAGGGGTCCCGGTGCGGACACCACCGGAAGAATCACCTGGCCAGGGTTCAAGGTGATTACCCCTGTCGAGGCTGCCGATTACTACCCCGGGAAGTTCTTTGAGCTGGCTAACTCCACTGACCGTGACGCTTGGATCCTTGACTCTGGCGTACCCTATGCCCTTGGCCCTCTTCCACCATCCACCGCCCAGACCGTAGTTTAA 1758 0.5353 MANGFDSVHERKKKLAVLSVSSVLLIAMVAAVAVGINDDVHGHHMEEEGDGSIVKSQRSANMICQSAEYKETCHKSLANASEDNPDLKQLIITAFNATAQEIHSKIENSTLYHELATDNMTKQAMDICKEVLGYAVDDINESAATLEKFDLNKMDDYAYDLKVWISGTIAHQQTCLDGFENTTTEAGKTIAKVLNTSLEMSRNALDIVNGVSSLFKGLNLTSFGSSHRKLLAEETLVDGFPSWVSEGQRKILESTDIKPNVVVAQDGSGQVTTIHEALKLVPKKNKTPFVIYIKAGVYREYVNLNKHMSFVTMIGDGPTLTRITGDKNYVDGFQTYNTATVGVNAANFMAKNIGFENTAGAEKHQAVALRVTADKAVFYNCHMDGYQDTLYTQSQRQFYRDCIVTGTIDFVFGDAVAVFQNCKFIARKPMENQQCMVTAGGRTKIDSPSALVFQSCIFTGEAELKAVTPKIAYLGRPWRLFSKVVIMDSEIDDIFAPEGYMPWMGSAFKDTCTYYEFNNRGPGADTTGRITWPGFKVITPVEAADYYPGKFFELANSTDRDAWILDSGVPYALGPLPPSTAQTVV* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2823 585 CDD PMEI-like_3 63 213 - -
Vra7g2823 585 Pfam Pectinesterase 260 551 IPR000070 GO:0030599|GO:0042545
Vra7g2823 585 SUPERFAMILY Pectin lyase-like 257 552 IPR011050 -
Vra7g2823 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 210 IPR006501 GO:0004857
Vra7g2823 585 PANTHER PECTINESTERASE 8 578 - -
Vra7g2823 585 Pfam Plant invertase/pectin methylesterase inhibitor 62 207 IPR006501 GO:0004857
Vra7g2823 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 211 IPR035513 -
Vra7g2823 585 SMART PMEI_2 55 207 IPR006501 GO:0004857
Vra7g2823 585 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Vra7g2823 585 ProSitePatterns Pectinesterase signature 1. 285 304 IPR018040 -
Vra7g2823 585 Gene3D - 254 574 IPR012334 -
Vra7g2823 585 PANTHER PECTINESTERASE 8 578 - -
Vra7g2823 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 210 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2823 Vra-Chr7 48406872 48409209 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2823 1 583 Carbohydrate Esterase AT3G05610 44.332 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2823 K01051 - gmx:100820068 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2823 7 48406872 48409209 Vra7g2823 7 48406872 48409209 ECH
Vra7g2823 7 48406872 48409209 Vra5g0111 5 919219 921291 PCT