Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2822 ATGCAGATATTCGTGAAAACTTTGACCGGCAAAACCATCACCCTTGAGGTTGAATCCTCCGACACCATTGATAACGTGAAAGCCAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGAGACTTATCTTTGCGGGTAAGCAACTCGAGGATGGTCGCACTCTTGCGGATTACAACATCCAAAAGGAATCCACTCTGCACCTCGTGCTTCGCCTCAGAGGTGGCATGCAAATCTTTGTCAAGACTTTGAGCATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACCATAACCTTAGAGGTGGAGAGTTCAGATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCCCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAACATACAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTCTGATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAAGAGGGAATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAACATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTAGAGAGCTCTGATACAATTGATAATGTGAAAGCAAAAATTCAAGACAAGGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAACAATTGGAAGATGGTCGCACCTTGGCAGACTACAACATTCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTTCGCGGTGGCTTCTAA 945 0.4614 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLSMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2822 314 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vra7g2822 314 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vra7g2822 314 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vra7g2822 314 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vra7g2822 314 SMART ubq_7 1 72 IPR000626 GO:0005515
Vra7g2822 314 SMART ubq_7 238 309 IPR000626 GO:0005515
Vra7g2822 314 SMART ubq_7 86 157 IPR000626 GO:0005515
Vra7g2822 314 SMART ubq_7 162 233 IPR000626 GO:0005515
Vra7g2822 314 SUPERFAMILY Ubiquitin-like 237 313 IPR029071 -
Vra7g2822 314 ProSitePatterns Ubiquitin domain signature. 112 137 IPR019954 -
Vra7g2822 314 Gene3D - 81 161 - -
Vra7g2822 314 Gene3D - 1 80 - -
Vra7g2822 314 Gene3D - 238 314 - -
Vra7g2822 314 Gene3D - 162 237 - -
Vra7g2822 314 ProSiteProfiles Ubiquitin domain profile. 86 161 IPR000626 GO:0005515
Vra7g2822 314 CDD Ubl_ubiquitin 238 313 - -
Vra7g2822 314 ProSiteProfiles Ubiquitin domain profile. 238 313 IPR000626 GO:0005515
Vra7g2822 314 SUPERFAMILY Ubiquitin-like 86 161 IPR029071 -
Vra7g2822 314 CDD Ubl_ubiquitin 1 76 - -
Vra7g2822 314 ProSiteProfiles Ubiquitin domain profile. 162 237 IPR000626 GO:0005515
Vra7g2822 314 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vra7g2822 314 Pfam Ubiquitin family 164 235 IPR000626 GO:0005515
Vra7g2822 314 Pfam Ubiquitin family 88 159 IPR000626 GO:0005515
Vra7g2822 314 Pfam Ubiquitin family 240 311 IPR000626 GO:0005515
Vra7g2822 314 ProSitePatterns Ubiquitin domain signature. 188 213 IPR019954 -
Vra7g2822 314 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vra7g2822 314 SUPERFAMILY Ubiquitin-like 161 237 IPR029071 -
Vra7g2822 314 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vra7g2822 314 CDD Ubl_ubiquitin 162 237 - -
Vra7g2822 314 PANTHER - 85 241 - -
Vra7g2822 314 PANTHER - 1 84 - -
Vra7g2822 314 PANTHER - 152 313 - -
Vra7g2822 314 PANTHER UBIQUITIN 152 313 - -
Vra7g2822 314 PANTHER UBIQUITIN 1 84 - -
Vra7g2822 314 PANTHER UBIQUITIN 85 241 - -
Vra7g2822 314 ProSitePatterns Ubiquitin domain signature. 264 289 IPR019954 -
Vra7g2822 314 CDD Ubl_ubiquitin 86 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2822 Vra-Chr7 48398208 48400052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2822 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.72e-48 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2822 - K08770 vra:106768219 607.06