Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2821 ATGGAAAACCCTTCTTTTCCTTTAGGCATGAACAACCACAGTTTTTCTTCAGACATTGATGCGTTTAAGCAGCAGAAGAAAAAGGCAGGGCGGAAGAAGATTGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAAAAAGCGAGTGAACTCTGCATTTTGTGCAATGTCAATATAGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCGGTCATCCAGACTTCGACGGCATTGTTGAAAGCTACCTTAAAGGTTCCAAAGTGTTTGATCCACCGGAGTCAAGGGAGAGATCATCAGTGTCGTATGAAGAGTGCAACAAGCAATACGAGGAGGCAATGAAGAACTTGGAGTTGGAAAAGAAGAATCTCAGAGAAACTGAAACTCTGGTTAATAAGGGGTGTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTCAAAGTGAGTTAGAACAGTTTATGGTCTCTGTTTATGAGTTGAGGAGAAAATTAGCTGAAAGGGGCGGTGAATTGTTGATGCAATCAATGATATAG 582 0.4107 MENPSFPLGMNNHSFSSDIDAFKQQKKKAGRKKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDFDGIVESYLKGSKVFDPPESRERSSVSYEECNKQYEEAMKNLELEKKNLRETETLVNKGCNRRWWEDPIDQMSQSELEQFMVSVYELRRKLAERGGELLMQSMI* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2821 193 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Vra7g2821 193 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Vra7g2821 193 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Vra7g2821 193 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 26 191 - -
Vra7g2821 193 Coils Coil 114 144 - -
Vra7g2821 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Vra7g2821 193 PANTHER MADS BOX PROTEIN 26 191 - -
Vra7g2821 193 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Vra7g2821 193 SUPERFAMILY SRF-like 30 102 IPR036879 GO:0003677|GO:0046983
Vra7g2821 193 Gene3D - 42 107 IPR036879 GO:0003677|GO:0046983
Vra7g2821 193 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2821 Vra-Chr7 48394097 48394915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2821 26 178 Type I MADS-box Gene Family AT5G60440 41.104 2.76e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g2821 SRF-TF 8.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2821 - - vra:106766532 350.517