Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2817 ATGTGTGGTGGTTCTATCATATCTGATTTCATAGACGTTGATACCAAGAATGTTCCAGAATCCACCACCCACCACCTCTTCTCTCAGCTCCACACATTCAACGCCGCCGCTTCTTCCACAATTCAACCATCACACCCTACACACAACAAAGTGGAGGAGCCATGTGAGAAGGTGAAGAACAACAGAGTCGTTGCAGAGAAGGGTGGTGCGCGCGTACGGAAGAATGCCTACAGAGGAATCAGGCGAAGGCCGTGGGGCAAGTGGGCTGCGGAAATAAGGGACCCACGCAAGGGCGTTCGCGTGTGGCTCGGCACCTTCGCCACCGCGGAAGAAGCCGCACACGCCTACGACACCGCCGCCGTACGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCGACCATCACCGCCACCCATCCAATACCAACAACAACAACCCATGTCTCAGCCCCGAGTTGACTCAGTCGTGTTATCAACCCAGTCTTAATAACCTCGACCACGACCCTCAACAACTCGCGCAGCATATTTCCAACCTGGAATCGTTTCTTGGTTTGGAGCACGAACAGCTTCCAATGCAGCCGCTGCCACTTCCCGAGTGGGACCCGCTCCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGTAAAATTTAA 654 0.5459 MCGGSIISDFIDVDTKNVPESTTHHLFSQLHTFNAAASSTIQPSHPTHNKVEEPCEKVKNNRVVAEKGGARVRKNAYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFATAEEAAHAYDTAAVRIRGDKAKLNFPDHHRHPSNTNNNNPCLSPELTQSCYQPSLNNLDHDPQQLAQHISNLESFLGLEHEQLPMQPLPLPEWDPLHDVVLSNHHLFCKI* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2817 217 MobiDBLite consensus disorder prediction 133 152 - -
Vra7g2817 217 Gene3D AP2/ERF domain 76 134 IPR036955 GO:0003700|GO:0006355
Vra7g2817 217 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Vra7g2817 217 PANTHER DNA-BINDING DOMAIN 38 159 IPR044808 GO:0003700|GO:0009873
Vra7g2817 217 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Vra7g2817 217 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Vra7g2817 217 Pfam AP2 domain 77 125 IPR001471 GO:0003700|GO:0006355
Vra7g2817 217 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Vra7g2817 217 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Vra7g2817 217 MobiDBLite consensus disorder prediction 137 152 - -
Vra7g2817 217 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Vra7g2817 217 PANTHER EREBP TRANSCRIPTION FACTOR 38 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2817 Vra-Chr7 48376865 48377668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2817 1 186 AP2-EREBP Transcription Factor Family AT3G16770 45.000 1.28e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g2817 AP2 8.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2817 K09286 - vra:106752604 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2817 7 48376865 48377668 Vra5g0108 5 866296 868456 PCT