Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2812 ATGGGGAGAATGGGACAAGACTCAGACCCCAAGTCCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTTGTATGTGTTCATCATGAACTTCTCTCAGAATCAGCTAACACAACTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAGTGCCATCCGTAAGAGGTACCATAAACTCGCCTTACAAGTTCACCCGGATAAGAATAAGCACCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCGTATGCATGTCTATCTAATGCAGCAAAGAGAAAAGCCTTTGACTTGGAGAGATATAAGCATTTCTGCATCGAGTGCAAAAGAATTCCGTATACATCCAGTAATGTCCCAGTCAATTCAGGGGGACCAGGTTTTAGGGCATGGAATATCATCACAAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGAGAAATGAGAGAAAGATTCATGGACGAGGCTAATGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCAGCCCAGAATCCGGTTGGGTTTCTACATAGAAGCAAGTCGCTTAATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCGTCGGATTATCTGTACCAAGGCTACCCTCACCTGAGGAGCAATATTTACAAGAATTCTTCAACTTTTTGGTACGTGCAGAGAAATAGTATGCTTCACAATGAAAAGGGAGGAGCGCTGCATGCCTCCCCTGTTTTTGAGGTCCAATCTAGGAGGTTATTTGCAAGCAAATTCGCTTTTGTCCCATCAAAATGCTAG 819 0.4237 MGRMGQDSDPKSKLVLEICSISTRSVVCVHHELLSESANTTFVDWYCILGVEENAGVSAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLERYKHFCIECKRIPYTSSNVPVNSGGPGFRAWNIITRSRSFKLWRNIREMRERFMDEANVIENCLRTNSMSRKESPAQNPVGFLHRSKSLNRFEKETPVFNPSDYLYQGYPHLRSNIYKNSSTFWYVQRNSMLHNEKGGALHASPVFEVQSRRLFASKFAFVPSKC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2812 272 PANTHER BNAC03G44070D PROTEIN 6 259 - -
Vra7g2812 272 SUPERFAMILY Chaperone J-domain 40 108 IPR036869 -
Vra7g2812 272 CDD DnaJ 44 97 IPR001623 -
Vra7g2812 272 ProSiteProfiles dnaJ domain profile. 44 108 IPR001623 -
Vra7g2812 272 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Vra7g2812 272 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vra7g2812 272 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vra7g2812 272 PRINTS DnaJ domain signature 80 100 IPR001623 -
Vra7g2812 272 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 259 - -
Vra7g2812 272 Pfam DnaJ domain 44 105 IPR001623 -
Vra7g2812 272 Gene3D DnaJ domain 31 118 IPR036869 -
Vra7g2812 272 SMART dnaj_3 43 100 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2812 Vra-Chr7 48340456 48341951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2812 22 105 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.264 7.24e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2812 - - gmx:100801809 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2812 7 48340456 48341951 Vra7g2812 7 48340456 48341951 ECH
Vra7g2812 7 48340456 48341951 Vra5g0104 5 828649 829797 PCT