Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2809 ATGGCTTCAACGGACGTCAGAGGAATTTTGACAGCTTTCAATCCTTCTCTGGACTTCTTTGCTATAACTGCCGGAGACGGTCGCGTCAAGATATGGGACACGCTGAGTGGCCAGGTTCAGACCGAGTTCGCAGATATTGCATCAACTCATTCAACAACTACGTCACAGAACAAATCCATTAACGGCCATCTCGCACTAGATTATACCTGCATCAAGTGGTTCTCCTTCGAAAGAAAGAGGAAACGGAAGCATGCATCCTCGTTGTTAGTACTTGGAACTGGTAGTGGTGATGTTCTAGCACTTGATGTTGATGCTGGTCACTTAAGTTGGAGAATTACTGACTGTCATCCCGGAGGTGTGAGAGCCATTGCATCTTCAGCAAACGTGTCAAGCATTTATACAGCTGGTGCAGATGGGATGGTATGTGCGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAGGCTTCTACCAAGGCGGTGTCCTGCATGTGTGTTTCTCCAGATGGAAAGACATTAGCTACTGCAGCTGCACAATTGAAGATTTTTAACTGCTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCCGGTTCTGTTAGATGCATGGTTTTCACTGAAGATGGCAAGTATATCCTCTCGTCCGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGGATGGATGGTCCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCAATGGAGCATCCTGCTGTCTTCCTTGATAGCAGGTGCATTGATAATGTGGAGGATGACATGCCTGGCATATGTGTTTTGGCCATTTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATTGAACAACTGCGTAATGCAAAAGCCACAAAAATATCATTATCTTTAGAAGACATGCCCTCCAGAAATTACAGAGGAACTCTGCCAGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAGCCATCATTCAGAAAAGTTCTTGTGCATTCTGGTACAGACGTAAAGTTGAATGTCTCTCGTGATGGTGTTCTTCTACCAACAAGTCAAGCTCTCGTCAAATCTAAGAAGGGAACAAATGCACAAACAGTTATTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTAATTCTCAAGAGAACGAGAAAGAGAAAGCATTTCAAAAACCTCTGGACAAGGATATAATTGATGATTTGTGGAGAAATGACGAGTCTGTTGAAATGGAAGATGATATGGCCCATAGTGAGGCTGATGAACTTTGCATGGAGGACCAGCTAAAATCACTGGGGATGCTTTCCGGTGAAAGTGAATATGCATCAAAAATTGAACTTTGCTCTAAGTTGTTGAAGGGTATTGATGTGGATGCTACTGTTCCAGCGAAAAAGATAAGAGCAACTGTTTTGTCTATGGAGCCAAGCAAAGCATTCATGCTACTGGAAGCGTTACTGGCTGCATGGGAATCAAGGTCATCTAGTGGAAAGTACATTCTTCCATGGATATACAGCATATTAGTGAATCATGCTCAAAATGTCATTGCTGAGGAATCTGATACACGTACGCTTGATACCTTAGACAAGATTAGCAATTTTAGAGGGGCAGCTCTTCAGCCTTTGTTACAATTATCAGGTCGTCTCCAACTGGTGACATCACAGATTGACAAAGCCTCCCAGACTATAAGCCATTCGGTGCATGGACTCCAAACAGAAGAAAGTGAAGATGAAGATGAAGATGAAACTAAGGATGAATATTATCACGAGGGAGATGACACTTCTGAAATAAGTACTGATGATGAAAGCTAG 1875 0.4229 MASTDVRGILTAFNPSLDFFAITAGDGRVKIWDTLSGQVQTEFADIASTHSTTTSQNKSINGHLALDYTCIKWFSFERKRKRKHASSLLVLGTGSGDVLALDVDAGHLSWRITDCHPGGVRAIASSANVSSIYTAGADGMVCAIDFMTGNLLEKFKASTKAVSCMCVSPDGKTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKYILSSAVGERYVAVWRMDGPKKQSASCVLAMEHPAVFLDSRCIDNVEDDMPGICVLAISEIGICYLWFGNSIEQLRNAKATKISLSLEDMPSRNYRGTLPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKVLVHSGTDVKLNVSRDGVLLPTSQALVKSKKGTNAQTVIALDRANAEDALLPIPKVFNSQENEKEKAFQKPLDKDIIDDLWRNDESVEMEDDMAHSEADELCMEDQLKSLGMLSGESEYASKIELCSKLLKGIDVDATVPAKKIRATVLSMEPSKAFMLLEALLAAWESRSSSGKYILPWIYSILVNHAQNVIAEESDTRTLDTLDKISNFRGAALQPLLQLSGRLQLVTSQIDKASQTISHSVHGLQTEESEDEDEDETKDEYYHEGDDTSEISTDDES* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2809 624 PANTHER OS03G0300300 PROTEIN 1 623 - -
Vra7g2809 624 MobiDBLite consensus disorder prediction 584 624 - -
Vra7g2809 624 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Vra7g2809 624 SMART WD40_4 188 228 IPR001680 GO:0005515
Vra7g2809 624 SMART WD40_4 148 185 IPR001680 GO:0005515
Vra7g2809 624 SMART WD40_4 3 33 IPR001680 GO:0005515
Vra7g2809 624 SMART WD40_4 105 145 IPR001680 GO:0005515
Vra7g2809 624 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Vra7g2809 624 Pfam WD domain, G-beta repeat 191 227 IPR001680 GO:0005515
Vra7g2809 624 MobiDBLite consensus disorder prediction 594 608 - -
Vra7g2809 624 PANTHER OS03G0300300 PROTEIN 1 623 - -
Vra7g2809 624 Pfam Dip2/Utp12 Family 481 574 IPR007148 -
Vra7g2809 624 Gene3D - 144 250 IPR015943 GO:0005515
Vra7g2809 624 Gene3D - 5 143 IPR015943 GO:0005515
Vra7g2809 624 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 233 IPR011047 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2809 116 229 U-box Gene Family AT2G33340 28.814 2.69e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2809 K14546 - gmx:100784148 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2809 7 48307248 48314182 Vra7g2809 7 48307248 48314182 ECH