Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2800 ATGTTGTTGTTGCTGTTATTATTATTATTATTGTTGTGGTGGTGCTACTGTTCTGTTAGGTTCGGTTTGGATCTCCGAAGCATGAATCTGGGCAACGGAAAGGGATCCATGTCAACGGTTACTACAACAGGGGTTATGAAATCTGGAGACGTTGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTCGACGATGATCCCACATGCCTCATGATTCTCGAGAAGATGCTTCGCACATGTCTCTACGAAGTTACCAAATGCAACAGAGCAGAGACTGCGCTTTCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGGACGGATTTAAACTTCTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTCATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGCGTGACTCATGGTGCTTGTGATTATCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAATGAGTGGAAAGACGCAGAGCAATCCGGCAGTGCCGAAGAAGGAGATCGCCAACCTAAGGCATCTGATGAAGCAGATTACTCTTCCTCGGCTAACGAAGGCAGTTGGAGAAACTCAAAGAAGAGAAGGGACGAGGAGGAGGAGGCAGAGGATAGAGATGACACATCCACGTTAAAGAAACCGCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAGCTCGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGGTTGTATCTTCGAAGATTGAGTGGAGTTTCTCAACACCAGAATAATATGAACAACTCCTTTCTCGGCTCTCAAGAGGCAACGTTTGGGACAATTTCTTCAATTAGCGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTTCCTGCTCAAAGTCTGGCTACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCCAAAGCTGGTGTACCAATGCCTATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCAAGGGTAAGATTTGGAGAAGGCCAACAGCAACATTTAAGCAGTAGTAAACCAATGAACTTATTGCTTGGAATCCCTACCAACATGGAGCCTAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCAGCTTGAATATGAGAGTCAATGCTTCTGCCCCACAAGGCAACCCCTTATTGATGCAGATGCCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACTGGTCCTCGTGTTCCCAGGCTTCCATCATCTCTGGGGCAGCCTAATGTATCAAATGGAATTTCTAATGGCTTTCTGGGAAGAAATGGCATTGCTGGTAATAACAGAGGACCTGCGTATAATCCTGTTCCACCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAAGCTCTGAAGTGTCCGTCAACAATAGTTTACCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCATTTCAGGAGGAAGTTACATCTGGAATTAAGGCATCTGGTGGATTCCCAAGTTATGATATTTTTAATGAACTGCACCATCACAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACAGTGCCCCCCATCATGCAAATCCTTTACAAGGTAACATTGATGTCTCCCCATCAGTTTTGGTGCATCAAGGGTTTTCTTCTACCCAGCAGACCGGCCAAAGCAGAGATGCTACTTTAATGGGAAAAGCTATGTTCTCCGTGGGAGAAGGCTCGGAACAAGATAACCTCCAAAATGCTGTTCAACACCTCCATCCGCTTCTTGTTGACAATTCAGTAAGGGTTAAGTCTGAAAGAATTCCCGATGCAAGCTCCCAAACTAATCTCTTCCCTGACCATTATGGGCAGGAGGATCTGATGAGTGCGCTTCTAAAGCAGCAAGAAGGCATGGGACCAGCTGAGAGTGAGTTCGAATTTGATGCTTATTCTCTGGACAACATCCCTGTCTAG 2121 0.4545 MLLLLLLLLLLLWWCYCSVRFGLDLRSMNLGNGKGSMSTVTTTGVMKSGDVVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLGSQEATFGTISSISGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPIMDQRNLFSFENPRVRFGEGQQQHLSSSKPMNLLLGIPTNMEPKQLANLHQSTQSIASLNMRVNASAPQGNPLLMQMPQSQPRGQMLSENTGPRVPRLPSSLGQPNVSNGISNGFLGRNGIAGNNRGPAYNPVPPNSSLLSFPMNQSSEVSVNNSLPLGSTPGISSITTKGSFQEEVTSGIKASGGFPSYDIFNELHHHKSHDWEITNPGLTYSAPHHANPLQGNIDVSPSVLVHQGFSSTQQTGQSRDATLMGKAMFSVGEGSEQDNLQNAVQHLHPLLVDNSVRVKSERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPAESEFEFDAYSLDNIPV* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2800 706 PIRSF RR_ARR_type-B 36 698 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vra7g2800 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 678 - -
Vra7g2800 706 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 296 IPR017930 -
Vra7g2800 706 Gene3D - 237 299 - -
Vra7g2800 706 MobiDBLite consensus disorder prediction 182 203 - -
Vra7g2800 706 Pfam Response regulator receiver domain 62 170 IPR001789 GO:0000160
Vra7g2800 706 SMART REC_2 60 172 IPR001789 GO:0000160
Vra7g2800 706 MobiDBLite consensus disorder prediction 448 473 - -
Vra7g2800 706 ProSiteProfiles Response regulatory domain profile. 61 176 IPR001789 GO:0000160
Vra7g2800 706 MobiDBLite consensus disorder prediction 182 237 - -
Vra7g2800 706 Pfam Myb-like DNA-binding domain 242 292 IPR001005 -
Vra7g2800 706 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 678 IPR045279 GO:0009736
Vra7g2800 706 CDD REC_typeB_ARR-like 62 176 - -
Vra7g2800 706 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 240 293 IPR006447 GO:0003677
Vra7g2800 706 Gene3D - 60 195 - -
Vra7g2800 706 SUPERFAMILY CheY-like 59 182 IPR011006 -
Vra7g2800 706 MobiDBLite consensus disorder prediction 216 237 - -
Vra7g2800 706 SUPERFAMILY Homeodomain-like 237 297 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2800 Vra-Chr7 48240050 48244152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2800 95 706 Response Regulator Gene Family AT3G16857 51.767 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vra7g2800 Response_reg 6.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2800 - K14491 gmx:100814930 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2800 7 48240050 48244152 Vra7g2800 7 48240050 48244152 ECH
Vra7g2800 7 48240050 48244152 Vra5g0091 5 734320 738195 PCT