Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2797 ATGGTGGATCCAACTGGAAAAGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCGGGGAACAGTCCCAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGAACCACCAAGACTCCACTCTGGAGGGGAGGTCCGGCGGGACCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTCTGGGGATAAGCAAGGGGAACAACGAGGATGGAAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCTGCTGCTATCGGTGGCGGCGCGTTGGGTAGGGAGGTATTGTTGCACCGATCACATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATGTCGCTCTCTTATGGATCCGTTTATGCCTGA 408 0.5637 MVDPTGKGSEGEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEDGRKGKKSGGAGAAAIGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2797 135 SMART GATA_3 29 82 IPR000679 GO:0006355|GO:0043565
Vra7g2797 135 ProSiteProfiles GATA-type zinc finger domain profile. 29 65 IPR000679 GO:0006355|GO:0043565
Vra7g2797 135 MobiDBLite consensus disorder prediction 10 38 - -
Vra7g2797 135 PANTHER OS01G0976800 PROTEIN 6 135 - -
Vra7g2797 135 Gene3D - 29 90 IPR013088 GO:0006355|GO:0008270
Vra7g2797 135 MobiDBLite consensus disorder prediction 1 49 - -
Vra7g2797 135 ProSitePatterns GATA-type zinc finger domain. 35 60 IPR000679 GO:0006355|GO:0043565
Vra7g2797 135 CDD ZnF_GATA 34 69 IPR000679 GO:0006355|GO:0043565
Vra7g2797 135 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 69 - -
Vra7g2797 135 Pfam GATA zinc finger 35 69 IPR000679 GO:0006355|GO:0043565
Vra7g2797 135 PANTHER OS01G0976800 PROTEIN 6 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2797 Vra-Chr7 48223716 48224745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2797 26 135 C2C2-Gata Transcription Factor Family AT5G49300 57.627 6.70e-37 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra7g2797 GATA 5.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2797 - - pvu:PHAVU_003G110400g 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2797 7 48223716 48224745 Vra7g2797 7 48223716 48224745 ECH