Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2757 ATGAACTACCACAATACGCGCCGGAGTCCTTCCGGTTTCCGCTCTGGCGCTGCCCCTAACCACCGCGCCTTCGACAGTCCTCCACGTCGCTCTCCTGGAAGGGGAGGAGGATTCCGGCCGATGGGCGGGGAAGGTCCTGTGGAATTCGGATTCAACGGCCACCAGCCGCCACCGCCGCTTGTTGGTCAGAAACGAGGGTTTCCTGTCGCCGGGCGCGGAGGCGGTTCACCAGATCGTTTAGACGGTGGAAATTTTGCTAAGCTTTTTGTTGGGTCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGTCCATTGTTTGAGGAACATGGGAATGTGATCGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCTATACAAGTGCGATATGCTGACGGTGAACGGGAACGCCTTGGTGCAGTTGAGTACAAGTTATTTGTGGGCTCTCTGAACAAGCAGGCTCCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTGTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCACACAGAGATATGGCTCTGGCAGCTATTAATGCACTTGATGGACTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGCTCAAGACTTCCGTCCAATGTTACAGATCCTATGGGCGATCGAATGCCTCTCCCTAATGCTTGGCGACCAATGCAACCCCCAAATATGGGGCCATCCACTAATGCTGGTGTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGCATTGCCTACAAATGCAGGCGGTCCTATGACTGGTTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGCCCATGCCACAAATTCCACCACAGAATCAACAAATATCACCCTTGCAGAAACCTATTCAATCATCACAGGAGGTGCCATCATCCCATCAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTGTTAGACAGCATGGCCAGCCACATCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACGTGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACCAAATGCTATGTCTGCTGCATTTCCTCAGCCTCCTCTTGACACCAGCATGCAATCTAATACTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCGTGCCACAACAGCCTATTCAGCAATCCCCTTCTCCCTTAGCCCAGATGCTGTCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAACTGCAGATGATGCAGCCTTCTAGTCAAGCATTATCATTGCAGCAAAATGCAGAAGCTACTAAAAAGCATTCTCAATGGGTTGGGACTGTAGCACAACCAGTGGCCAGCACTCATGCAACTGCACCTGCTGCAGACGCCCCTTCATCCAAACTTGCTACTTCAGCCTTACCAGCAATAAACCATAACTCGGCTCTTGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGTCTCACACTCAGTCACAACCTTCGGTACTACCTGCCCAGCAAATTCCTCAGTTCCAACAGGTTCAGCCTCAGAGTCATCTCCAAGGACAAGTTCTTCACCAGCAACAAGCACAACAGCCTCCTTTGTCCTCTTCATTCCAGCCATATGGCGTTACAGGCCCTCAAAATGTTCAGGATGTTGGTTATAAACAGTTACAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTCACAGGGTGTTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTTCAGGAGTATGA 2199 0.4829 MNYHNTRRSPSGFRSGAAPNHRAFDSPPRRSPGRGGGFRPMGGEGPVEFGFNGHQPPPPLVGQKRGFPVAGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALDGLYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNVTDPMGDRMPLPNAWRPMQPPNMGPSTNAGVHGMGPPMLPRSGEMALPTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQPMPQIPPQNQQISPLQKPIQSSQEVPSSHQLYPQAPVPYPQTSVRQHGQPHLPPSAGPLQSQQIRGVSGQFPTSQPQTQPNAMSAAFPQPPLDTSMQSNTALATNQQQVPPSVPQQPIQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALSLQQNAEATKKHSQWVGTVAQPVASTHATAPAADAPSSKLATSALPAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQSHTQSQPSVLPAQQIPQFQQVQPQSHLQGQVLHQQQAQQPPLSSSFQPYGVTGPQNVQDVGYKQLQPTVISAGDPGRYSQGVHSTQELMWKNKPSGV* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2757 732 SMART ww_5 588 620 IPR001202 GO:0005515
Vra7g2757 732 MobiDBLite consensus disorder prediction 655 688 - -
Vra7g2757 732 CDD RRM2_FCA 178 257 IPR034645 -
Vra7g2757 732 CDD WW 590 620 IPR001202 GO:0005515
Vra7g2757 732 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 53 689 - -
Vra7g2757 732 MobiDBLite consensus disorder prediction 713 732 - -
Vra7g2757 732 SUPERFAMILY RNA-binding domain, RBD 67 171 IPR035979 GO:0003676
Vra7g2757 732 ProSitePatterns WW/rsp5/WWP domain signature. 593 618 IPR001202 GO:0005515
Vra7g2757 732 SMART rrm1_1 178 253 IPR000504 GO:0003723
Vra7g2757 732 SMART rrm1_1 87 163 IPR000504 GO:0003723
Vra7g2757 732 MobiDBLite consensus disorder prediction 328 495 - -
Vra7g2757 732 MobiDBLite consensus disorder prediction 357 495 - -
Vra7g2757 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 151 IPR000504 GO:0003723
Vra7g2757 732 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 247 IPR000504 GO:0003723
Vra7g2757 732 Gene3D - 175 265 IPR012677 -
Vra7g2757 732 MobiDBLite consensus disorder prediction 257 313 - -
Vra7g2757 732 MobiDBLite consensus disorder prediction 705 732 - -
Vra7g2757 732 SUPERFAMILY RNA-binding domain, RBD 177 279 IPR035979 GO:0003676
Vra7g2757 732 ProSiteProfiles WW/rsp5/WWP domain profile. 593 620 IPR001202 GO:0005515
Vra7g2757 732 MobiDBLite consensus disorder prediction 1 80 - -
Vra7g2757 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 257 IPR000504 GO:0003723
Vra7g2757 732 Pfam WW domain 592 618 IPR001202 GO:0005515
Vra7g2757 732 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 167 IPR000504 GO:0003723
Vra7g2757 732 Gene3D - 81 174 IPR012677 -
Vra7g2757 732 PANTHER TRANSFORMER-2-RELATED 53 689 - -
Vra7g2757 732 SUPERFAMILY WW domain 592 625 IPR036020 GO:0005515
Vra7g2757 732 Gene3D - 586 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2757 Vra-Chr7 47817654 47826713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2757 85 262 Eukaryotic Initiation Factors Gene Family AT4G34110 26.562 1.82e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2757 - - gmx:100798390 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2757 7 47817654 47826713 Vra7g2757 7 47817654 47826713 ECH