Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2741 ATGGATGAAAAAGGAAGAAGAACCTCCAACACCCTTTTGACTGACGACGAGATCGACCTTCGAAGAGGCCCTTGGACCGTCGATGAGGACCTCACTCTCATCAATTACATTGCCACTCACGGCGAAGGTCGCTGGAACACCCTCGCCCTCTCTGCTGGGCTGAAACGAACGGGGAAGAGTTGCAGATTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGACGTGGAAACATCACGCTTGAGGAACAACTTTTGATCCTGGAGCTCCATTCTCGCTGGGGAAACCGATGGTCGAAAATTGCTCAATATTTGCCTGGTAGAACGGACAATGAGATAAAGAACTATTGGAGAACTCGTGTCCAAAAGCATGCGAAACAACTGAAATGTGACGTGAACAGCAAACAGTTCAAGGACGCCATGCGTTACCTTTGGATGCCGAGGTTGGTGGAACGCATTCAAGCAGCTGCAACTGCCTCGGTCACCACCAACAATGCATACACCTCTGAGAACAACATTAAAAACAACCAAATAGAGGTTCATAATCTCAAGGACAAAATGGGATTAATCGAACCTTCGCTCATCAACAACGACTTCGTGGGTTCCTACGTCATGCAACAAAGTCACACCCCAGAGAACAGTAGCACGGCTTTGTCGTCATCAGACTCGTTCGGGACTCAAGTCTCAACAAAATCTGATCTCACCGATTATTACAGCGTTCCGGTTAGCAGTAACAATAACAACGCTACTCCTGCAGATTATTATCAACCATCTCAAATGAGTTACTCCAATTGTTTCCCTCAAGGATTGGATTTTCAATCCCTAGATCCGTGGAACCTGCAGAATGGGGACTCGTCTGACAATTTTTGGAACGTTGAAAGCATGTTGTTCTTGGAGCAACATCTCATGAACGACAACATGTGA 921 0.4669 MDEKGRRTSNTLLTDDEIDLRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAATASVTTNNAYTSENNIKNNQIEVHNLKDKMGLIEPSLINNDFVGSYVMQQSHTPENSSTALSSSDSFGTQVSTKSDLTDYYSVPVSSNNNNATPADYYQPSQMSYSNCFPQGLDFQSLDPWNLQNGDSSDNFWNVESMLFLEQHLMNDNM* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2741 306 Gene3D - 19 75 - -
Vra7g2741 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Vra7g2741 306 SMART sant 21 71 IPR001005 -
Vra7g2741 306 SMART sant 74 122 IPR001005 -
Vra7g2741 306 CDD SANT 24 69 IPR001005 -
Vra7g2741 306 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 302 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra7g2741 306 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vra7g2741 306 CDD SANT 95 118 IPR001005 -
Vra7g2741 306 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Vra7g2741 306 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vra7g2741 306 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vra7g2741 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Vra7g2741 306 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vra7g2741 306 PANTHER MYB TRANSCRIPTION FACTOR 1 302 - -
Vra7g2741 306 Gene3D - 79 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2741 Vra-Chr7 47705714 47707761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2741 1 240 MYB Transcription Factor Family AT3G06490 61.569 3.44e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g2741 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2741 K09422 - gmx:100791349 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2741 7 47705714 47707761 Vra7g2741 7 47705714 47707761 ECH