Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2736 ATGATCGTGAGTCCAAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGTCCATTCCGATGTTGGACGTCAAGTATCATATTTGCGTTGCGCAAGAACACAACGTTGAGGTCGTGGTTTCGCCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCACTCGGATTTCATTAAGCATTCCATTTCGGAGACCCCTGCGGCGAGTTTTGTTCCAAATGCCCGTTCTGGTAGCTATACTGAGATTGGGCCGCGGGTTTCTATGGATGATGAACACATCTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCTTTTTATGCAGTTTTTGATGGTCATGGAGGACCTGAAGCAGCTGCTTTTGTTAAGAGGAATGCTATGAAATTGTTTTTTGAAGATGCGGACATGCTGCAGACATATGATGATACTGATTCGTTCTTTCTAGAGAAATTAGAGGATTCCCATAGGAGAGCTTTTCTACGGGCAGATATTGCCTTGGCTGATGAACAAACTGTTAGTAGTTCGTGTGGAACGACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGCCGAAGGGGTGTGGCTGTTGAGATGTCTAACGATCACAGGCCAAGTTTTCTGCCAGAACGGCTGAGGGTGGAGGAGGTAGGTGGATTCATTGATGATGGATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGAGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTACGACTGGCTAAATTGACCGAGGAGGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATAATGACCCACAGCAGTGTGCTATGGAACTAGTCAAGGAAGCATTGCGCCTGCATACATCGGATAATCTCACTGTGATTGTTGTATGTTTATCGCCCATTGAAAGCATTGTTGAATCATGTCCTCCCCAGAGGCGAAGATTCAAAGCCTGCAACCTGACCGAAGAGGCCCGTAATAGGTTGAAGAGCCTTATTGAGCGAAATTGA 1164 0.4648 MIVSPKMVAEAEIICQQSIPMLDVKYHICVAQEHNVEVVVSPKSPSPSVPIFGQAVNHSDFIKHSISETPAASFVPNARSGSYTEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPEAAAFVKRNAMKLFFEDADMLQTYDDTDSFFLEKLEDSHRRAFLRADIALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSFLPERLRVEEVGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLAKLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQQCAMELVKEALRLHTSDNLTVIVVCLSPIESIVESCPPQRRRFKACNLTEEARNRLKSLIERN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2736 387 Gene3D - 60 353 IPR036457 -
Vra7g2736 387 SMART PP2C_4 69 348 IPR001932 -
Vra7g2736 387 Pfam Protein phosphatase 2C 89 342 IPR001932 -
Vra7g2736 387 PANTHER PROTEIN PHOSPHATASE 2C 7 374 IPR015655 GO:0004722|GO:0006470
Vra7g2736 387 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 374 - -
Vra7g2736 387 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Vra7g2736 387 ProSiteProfiles PPM-type phosphatase domain profile. 79 350 IPR001932 -
Vra7g2736 387 SMART PP2C_SIG_2 94 350 IPR001932 -
Vra7g2736 387 CDD PP2Cc 79 350 IPR001932 -
Vra7g2736 387 SUPERFAMILY PP2C-like 72 352 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2736 Vra-Chr7 47644229 47646680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2736 1 384 PP2C-type Phosphatase Gene Family AT1G48040 55.838 3.95e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2736 K14803 - gmx:100775577 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2736 7 47644229 47646680 Vra7g2736 7 47644229 47646680 ECH
Vra7g2736 7 47644229 47646680 Vra10g0739 10 13414178 13416447 PCT