Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2727 ATGGCCGAGACCACAAAATACATTCCCAACTCACAATTAGAGCTTGAAGAGATATTGCAAGAAGCATCACATCGTTGGCTTCGACCTGTTGAAATATGTGAGATACTTCGGAACTATAAGAAGTTTAAGTTAACACCAGATCCACCTATTAGGCCTCCAGCTGGATCAGTATTCCTGTTCAATAGAAAAGCACTTCGTTATTTTCGCAAGGATGGTCACAGGTGGAGGAAGAAAAAAGGTGGGAAGACTGTAAGAGAAGCTCATGAAAAGTTGAAGGTTGGTAGTGTGGATGTCTTGCATTGCTACTATGCCCATGGAGAGGATAATGAAAACTTCCAACGAAGAAGTTTTTGGATGCTTGACCAGCAGTTAGAGCACGTTGTCCTTGTTCATTATCGTGAAATTAAAGAGGGCTGCAAATCTGGCATCTCTCCTTTTCCGGTAGTTCCAGTAACCCTGGTTGGTAGCTCTCAAAATAGTTCAGTGCTTTCCTCTACCAGAACAAACACACCAATATCTATAGTTCAAACATCTTTCACATCAAGTGCAAATAAAGTGGATCAGAATGGACACTCTTCAGAGTATGAGGATGTCAATTCAAAAGATGGTCCTCAATCCTCCTCTCATGCTCAGCCTATCAGCAATTCCGTAATTCACAGTGCACCTTCGTTTACACATGAAGTTGCTGGGTTTTCTGAGTTGGTGAGGAACCCCTTGATTTCAACGTTGTCATCTACTTTCCCTAGTTATTCTCCTGGTACTGTCTTCTCTCAGAGGAGGTTAGTTCAGAATTCTAGCAGAAACAAAATTTATATGCATGATGAAAGACATCAGACTGAAGGATCTGTTGAAAGCTCGGAAGCTGACTTCACTGTTCATCTGCTAAACAATGCTAAGATAGATGCTGTTAACAGAATGCAAGATGGTGTAATTTTCAGAGATAGCCACATGTACATCCAACAAGTTGAAGAAAATTTACTGACTGTTGGTCAGGTGCAAAACGAGGATGGTCTAGATATATTCTATGCTCAATTATATGATCGTAATGATCATCCAATTGTTGCAACTACCAAAGCGCTAGTTGAACAGAAACTTAAAGATGGGGAATCAAAGCAGGCTGAATCTGGGGAAATCAAGAAACTTGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGCGAAAATTCCTTGATGGCTTCAGATTCTAGTAATTATTGGAGTACACTTGGTGCTCATAATGAGGATAAGGAAGTATCTAGTTTACAACCCATACAGTTGGATATGGATTCATTAGGCCCTTGTCTTTCCCAAGAGCAACTATTTAGTATCCATGACTTTTCTCCAGAGTGGGCATATACTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTATCGGAAGTAAAAAGCCCTCTAGCGAAACCAAATGGGGATGTATGTTTGGTGAAATTGAGGTTTCTGCTGAAGCTTTAGCAGGTAATGTGATACAGTGTCAGACTCCTTTGCACTCATCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAAATTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTCCGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGACCTGACAATAATTTGTTGGACTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTATTCCGTGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTCCAGATTGATGGAATCGATCATATAAACCCGAGAAATGTACTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATTACATGTGTTGGATGCTGGGGGCCAAGGAGTAATACATTTAGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCGTTGGTTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCCTGGAAGAACAGGACTTCATTGGGCTTCGTATTTTGGGAGAGAAGAAACTGTTATTGCTCTTGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACTTCAGCACTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGTGGATCTGATAAATCGATTATCTATACTGACTGCCAAGGAAAATGAGACTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTCAGTCTGCTGAAGATGATTCGTCTAATTTTACAATGGATGAGCAACACTATGTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAATTAGCCAAAAGTGGAAGTGATATCTCAGACTCGGTACTCGACATAGTTGCCGATTCTTTGAGCAAGGTACAGAACATGTATCACTTTGAGGATTATTTACATTTTGCGGCCTTAAAGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGATACGCAACCGCATTGTAAAAATCCAGGCTCGTATCAGAGGACAGCAAGTTCAAAAGCAATACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCAATACTTCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCAGGGAGGGCAGCCGGTTGGCATTGATGAATATGACTTTCTTAGTGATGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTCGATAGAGTCAAGTCCATGGTTCGTAACCCAGATGCAAGGGATCAGTACATGAGGCTCATCATGAAATACCAGAATTTTAAGATTGATGATAGCGGAAGCACTCAATCACGTGTCGATTAG 2967 0.4139 MAETTKYIPNSQLELEEILQEASHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSVFLFNRKALRYFRKDGHRWRKKKGGKTVREAHEKLKVGSVDVLHCYYAHGEDNENFQRRSFWMLDQQLEHVVLVHYREIKEGCKSGISPFPVVPVTLVGSSQNSSVLSSTRTNTPISIVQTSFTSSANKVDQNGHSSEYEDVNSKDGPQSSSHAQPISNSVIHSAPSFTHEVAGFSELVRNPLISTLSSTFPSYSPGTVFSQRRLVQNSSRNKIYMHDERHQTEGSVESSEADFTVHLLNNAKIDAVNRMQDGVIFRDSHMYIQQVEENLLTVGQVQNEDGLDIFYAQLYDRNDHPIVATTKALVEQKLKDGESKQAESGEIKKLDSFGRWMDKEIGGDCENSLMASDSSNYWSTLGAHNEDKEVSSLQPIQLDMDSLGPCLSQEQLFSIHDFSPEWAYTGVRTKVLIVGTFIGSKKPSSETKWGCMFGEIEVSAEALAGNVIQCQTPLHSSGRVPFYVTCSNRLACSEVREFQFDEHPTKILGPLGIKISPEVEVRLQIRLLKLVDLGPDNNLLDCSVSGCEKCKLKGIMYSVRGDSGVFKETFQIDGIDHINPRNVLFQRLMRDKLYEWLIYKVHEGGKGLHVLDAGGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNPGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEVDLINRLSILTAKENETGNIATTIATDSAFQSAEDDSSNFTMDEQHYVKESLAVFRKSAHAAASILAAFRARSFCQRQLAKSGSDISDSVLDIVADSLSKVQNMYHFEDYLHFAALKIQKRYRGWKGRKDFLKIRNRIVKIQARIRGQQVQKQYKKVVWSVSIVEKAILRWRRKGAGLRGFQGGQPVGIDEYDFLSDGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLIMKYQNFKIDDSGSTQSRVD* 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2727 988 SMART iq_5 872 894 IPR000048 GO:0005515
Vra7g2727 988 SMART iq_5 849 871 IPR000048 GO:0005515
Vra7g2727 988 Gene3D Immunoglobulins 439 537 IPR013783 -
Vra7g2727 988 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vra7g2727 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 967 - -
Vra7g2727 988 ProSiteProfiles IQ motif profile. 850 879 IPR000048 GO:0005515
Vra7g2727 988 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Vra7g2727 988 MobiDBLite consensus disorder prediction 183 212 - -
Vra7g2727 988 Gene3D - 848 897 - -
Vra7g2727 988 Pfam IQ calmodulin-binding motif 853 870 IPR000048 GO:0005515
Vra7g2727 988 Pfam IQ calmodulin-binding motif 876 894 IPR000048 GO:0005515
Vra7g2727 988 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vra7g2727 988 SUPERFAMILY Ankyrin repeat 630 739 IPR036770 -
Vra7g2727 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 900 IPR027417 -
Vra7g2727 988 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vra7g2727 988 Gene3D - 619 742 IPR036770 -
Vra7g2727 988 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Vra7g2727 988 SUPERFAMILY E set domains 446 531 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2727 Vra-Chr7 47469208 47476873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2727 378 985 CAMTA Transcription Factor Family AT5G09410 41.297 3.11e-150 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vra7g2727 CG-1 7.6e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2727 K21596 - gmx:100818336 1607.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2727 7 47469208 47476873 Vra7g2727 7 47469208 47476873 ECH