Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2719 ATGGAGGCTGAGTTTGGGGGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAGCCTCTCAATTCAGTGCCATCAGACTGTAGGAGTCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCGAAAAAGGCCAATCTTGCAAACGATTTCTCTTCTTCTTTAATCAACCCAGGTGAGGGAAAGAAGGAATTGGAGAAAAGGAGGAGGCGTGTTATAGGGGAAGGTGAAGGGGAGGGGATGAATGATGAAGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCACGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAGGTGGAAAGAAGACAAAGGTAATTGGGACTACTACTGCTTCTGCTACCACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGCGATGTTCATTCTAAGGCCACTGTGGCACTAGTGGGAGATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCATAACAGGAGGAGGAGGAAAACTCATCCCGATGTTACTGTTGTTAATGAAGGCTCTCATAACAGTGGAAGGGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGCTCAGATCATACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACTTGGCAAGTCTGGCTGCTCCAAATAATGATAGAACTTTAGCCTCTTTATTGGAGAACTCTAAAGGTTTGTTAAATGATGGGACATCTGGAGGTGCTCATGATGAACCCAACCTGCATTCAAACACTCCTGAAGCTTCCAGACCGTCTGGTTCTTCCCTTCAGATTGATAATGGCTTCATCAGTCAGGATCCTCCAATATCTATGGCACAGTGTGAAACAAGGCCTACTAATGGTGGAGTAGAAAATTTGAGACCACCTTCAGGAGCACCATTCTCAAGTATAAGTCAATCAAAGGGAAATCTTCCATGCCAATTAACTGCTACTGAGACTACACTTAGAAGGAACAACTTAAACAACGTTGACCTGAATAACGTATACAGTGATGTGCAGAATACTGATGAGAATCATAAGAAGCCTTATCCTCATGTAGCATCAGAGGTGGGATCTAGTGATCTTCCCTCATGGTTGCAATGTGCTTCTCTCAAATCAAGTGGAGAAGCTAAGAGTTGCACAGATCGAATTGTTTTTAAACTCTTTGGAAAGAATCCAAGTAATTTTCCCCTTCTTCTCCGTTCACAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATATATCTTTGTCTTGAAAAATCTGCATGGGAAGAGCTCTGCTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTAGCTCGTCAAATGATACATTTTGGAGAACAGGGTGGGTATTTGCAAGGGTCCAGCACTCTGTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGCTCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGTTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATGTGGTACATGCTAGTTGTCATGATTTGATTGGTGAAGATGAGGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAGATGTAACTGGGAGGGGTTTTATTGAGGTGGAAGACCATTGTCTTAGAAGCTGTTCCTTTCCATTTATAGTTGCAGAGAAAGAAGTCTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCTGCTGAAACCACTAATGATTTCCAGATTAAAAACCAACAAATGGAAGAAAAGGCTCAAGCTCTTAATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTATGAAAGTTAGGCTAGGTCCCATGGCTCCTATCCATGATCTCTTCCAATTTAATCGGTTCACGTGGCTAGTTGACTTCTCTATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTATTGGATATTATATTTGATGGGGGTGTTGATACAGGAGAACAGGCCTCCATTGAGCTTGCATTGTTAGACTTGAGTCTTCTACACAAAGCTGTGAAGAGAAACAATAGACCTATGGTAGAACTACTATTAAGATTTGTGCCAGTTAAAACATCAGATGGTGCTGACAGTGAGGTGAAGCAAGTTGAAAAGGCCTCCGACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAACTATGAGAGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGCCCGAGATAGTGCAGGTTTGACCCCTAACGACTATGCATGTCTTAGGGGCTATTACTCTTACGTTCAACTTGTCGAGAGGAAGACCAAGAAAAAGGGTGAAAGACTACATGTGGTTGATATCCCTGGCACTGTTGCAGACAGTGGTATAAGAAAGCAGAAGCAATCAGGTAAAGTTTCTAGTTTACAGACAGAGAAGATTGAAACCACAGAAATGGGAAGTAACTGCAGGGTGTGCCAGCAGAAGTTGGTTTATGGTGGCATAAGAACTGGTGTGGTTTATAGGCCAGTCTTGCTGTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTCTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGAACAATATAG 3012 0.4353 MEAEFGGKNQYLYGPVVSGMKKAVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKANLANDFSSSLINPGEGKKELEKRRRRVIGEGEGEGMNDEGGSLSLNLGGHGYPFMVEGEEKGGKKTKVIGTTTASATTSNRAVCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSHNSGRGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASLAAPNNDRTLASLLENSKGLLNDGTSGGAHDEPNLHSNTPEASRPSGSSLQIDNGFISQDPPISMAQCETRPTNGGVENLRPPSGAPFSSISQSKGNLPCQLTATETTLRRNNLNNVDLNNVYSDVQNTDENHKKPYPHVASEVGSSDLPSWLQCASLKSSGEAKSCTDRIVFKLFGKNPSNFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLCLEKSAWEELCCNLGSSLRKLLSSSNDTFWRTGWVFARVQHSVAFLYNGQVVLDVPLCLKSSHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYVVHASCHDLIGEDEESIQHLNFSCHIPDVTGRGFIEVEDHCLRSCSFPFIVAEKEVCSEICKLENVIEAAETTNDFQIKNQQMEEKAQALNFLQEMGWLLHRSRMKVRLGPMAPIHDLFQFNRFTWLVDFSMDHGWCAVMKKLLDIIFDGGVDTGEQASIELALLDLSLLHKAVKRNNRPMVELLLRFVPVKTSDGADSEVKQVEKASDRFLFRPDTVGPAGLTPLHVAATMRGSENVLDALTDDPGMVGIEVWKSARDSAGLTPNDYACLRGYYSYVQLVERKTKKKGERLHVVDIPGTVADSGIRKQKQSGKVSSLQTEKIETTEMGSNCRVCQQKLVYGGIRTGVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2719 1003 Pfam SBP domain 158 231 IPR004333 GO:0003677
Vra7g2719 1003 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 19 1002 - -
Vra7g2719 1003 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Vra7g2719 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 1002 IPR044817 GO:0003677
Vra7g2719 1003 SUPERFAMILY Ankyrin repeat 734 890 IPR036770 -
Vra7g2719 1003 Gene3D - 746 905 IPR036770 -
Vra7g2719 1003 MobiDBLite consensus disorder prediction 318 361 - -
Vra7g2719 1003 MobiDBLite consensus disorder prediction 222 244 - -
Vra7g2719 1003 MobiDBLite consensus disorder prediction 308 382 - -
Vra7g2719 1003 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Vra7g2719 1003 Gene3D - 148 219 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2719 Vra-Chr7 47395352 47402054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2719 26 1002 SBP-box Gene Family AT3G60030 43.744 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra7g2719 SBP 6.7e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2719 7 47395352 47402054 Vra7g2719 7 47395352 47402054 ECH