Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2718 ATGGGTTGCTTTGGCTTCTGCACCGGAGATGATAGTGTTGCAATTGCTGACAGAGGACCTTTCATGCAAAACACTCCTACTGGGAACGCCAGTTATCATGGCAGACATAATGCAGTGCCTCCTCCTCGGCCAATAAATTTTCAACCTATTGCTGTCCCTTCCATTACAGTAGACGAATTGAAGTCTTTAACAGATAATTTTGGCTCAAAATCTTTCATTGGTGAGGGTGCATATGGGAAAGTATATCAAGCTACATTGAAAACTGGGCGTGCAGTGGTAGTCAAAAAGTTAGATTCCAGTAATCAGCCAGAGCAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAATGTTGTTGAGCTTGTTAACTATTGCGTTGATGGTCCTTTCCGTGCCCTTTCCTATGAGTATGCTCCTAAAGGATCCCTTCATGATATTCTTCATGGACGAAAAGGAGTCAAGGGTTCACAACCCGGGGAAGTGCTCTCATGGGCTCAGAGAGTTAAAATTGCTGTTGGAGCAGCCAGGGGACTTGAATATCTTCATGAAAAGGCAGAGATTCACATCATCCATCGTTACATTAAGTCTAGTAACATACTTCTTTTTGACGATGACGTTGCAAAGATTGCTGATTTTGACTTGTCAAATCAAGCCCCTGATGCAGCTGCACGTCTTCATTCTACCCGTGTTCTTGGGACTTTTGGTTATCATGCTCCGGAATATGCAATGACGGGACAACTCACTTCAAAAAGTGATGTTTATAGCTTTGGAGTTATACTGCTAGAACTCTTAACCGGGCGTAAACCAGTTGATCACACACTGCCCCGAGGACAGCAAAGCCTTGTCACCTGGGCAACACCAAAGCTCAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGACTAAAGGGAGAGTACCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTACAGTATGAAGCTGAGTTTCGGCCAAACATGAGCATTATAGTGAAAGCTTTGCAGCCTCTACTGAATACTCGTTCTACTCACGCAAAGGAATCACCAAACATGTAA 1083 0.4377 MGCFGFCTGDDSVAIADRGPFMQNTPTGNASYHGRHNAVPPPRPINFQPIAVPSITVDELKSLTDNFGSKSFIGEGAYGKVYQATLKTGRAVVVKKLDSSNQPEQEFLSQVSIVSRLKHENVVELVNYCVDGPFRALSYEYAPKGSLHDILHGRKGVKGSQPGEVLSWAQRVKIAVGAARGLEYLHEKAEIHIIHRYIKSSNILLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNTRSTHAKESPNM* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2718 360 Gene3D Phosphorylase Kinase; domain 1 42 141 - -
Vra7g2718 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 355 - -
Vra7g2718 360 Gene3D Transferase(Phosphotransferase) domain 1 143 359 - -
Vra7g2718 360 SUPERFAMILY Protein kinase-like (PK-like) 42 343 IPR011009 -
Vra7g2718 360 PIRSF ILK 45 357 - -
Vra7g2718 360 CDD STKc_IRAK 73 346 - -
Vra7g2718 360 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Vra7g2718 360 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 355 - -
Vra7g2718 360 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Vra7g2718 360 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2718 Vra-Chr7 47380355 47385725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2718 48 359 Receptor kinase-like Gene Family AT4G02010 47.239 1.17e-87 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vra7g2718 PK_Tyr_Ser-Thr 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2718 K13436 - gmx:547596 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2718 7 47380355 47385725 Vra7g2718 7 47380355 47385725 ECH