Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2705 ATGGAAGGGAATACCAGTTTGAACGAAATTACTAGCAACAATCAAGAATCATCCAGGAAGTCTAAAGATGAACCCGTCAAAACAGTACCATTATACAAGCTTTTCTCATTTGCCGATTCTTTGGATCACTTGTTGATGTTGGTGGGCACTGTGGGCGCCGTGGGGAATGGAATCTCCATGCCCTTGATGACTGTGATATTCGGGAGCATGATCAATGCATTTGGAGGATCCAGTACCACGGCCGAAGTTGTTGATGAAGTTTCCGGGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTGCTGCATCACTTTTGCAGTTGGCATGCTGGATGATCACTGGAGAGAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTCTGAGGCAAGATGTAACCTTCTTTGATAAAGAGACTAACACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTATTCAGTTAATGGCAACTTTCATTGGAGGGTTTGTTGTATCGTTCATCAAGGGGTGGCTTCTAACTGTTGTCATGCTGTCTTGTATTCCACTTCTTGTCTTGTCCGGGGCTCTGATGAGCCTGGTTATTACAAAAGCGTCATCCAGGGGACAAGCTGCTTATTCCAAAGCTTCAAGTGTTGTAGAACAGACGATTGGCTCTATCCGGACTGTTGCATCATTCACTGGGGAGAGGCTAGCAATAACTAAATACAATCAGTCCTTGATCAAGGCTTACATCAATGGACTGCACGAGGCAGTAGCTTCTGGTTTGGGTTTTGGTATGCTATACTTTGTCTTTATCTGCAGCTATGCTTTGGGCATTTGGTTTGGCGCGAAAATGATCATCGAGAAAGGATACACAGGAGGAGAGGTTGTGACTGTTATATTTGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTGAAAGGAAGCCATTAATTGATGCCTATGACACAAATGGTCGGAAGCTTGAAGACATTCGTGGCGACATAGAGCTTAGGGAAGTCTGCTTTAGTTATCCTACGAGACCTGATGAACTAATATTCAATGGATTTTCGCTTTCAATACCGAGTGGCACTACTGTAGCTTTGGTGGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCCGGTGCAGTACTTATTGATGGTATCAATCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTAGTCAGCCAGGAACCCGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGAAAGGATGGAGCAACTGATGAAGAAATCAGAGCTGCCGCAGAACTTGCTAATGCTGCCAAATTTATAGACAAACTACCTCAGGGACTAGATACGATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTGGCGATAGCAAGAGCGATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTTGCCCACCGTTTGAGTACTATAAGGAATGCCGATACCATTGCTGTTATCCATCAAGGAAAAATAGTTGAAAGAGGTTCACACGATGAGCTCACCAAGGATCCCGAAGGAGCCTATAGCCAGCTCATCAGACTACAAGAAATTAAGAAGTCAGAACAGAACGCAGAAGACAGAGAAAAACAAGAGAGTATATCGCAGTCTGGAAGACATTCAAGTAAAAGGTCTTCTTTGTTACGATCTATAAGCCTAGAGTCAACGGGAGTTGGAAACAGTGGTCGTCGTTCACTATCAGCGTCATTTGGTGTGCCCACATCTGCTGGCTTTATAGAATCCGTCGATGAGGGGTCTCAAGATCATCCTACAACATCTTCACCACCAGAAGTGCCTCTTCGTCGCCTGGGTTCCCTAAACAAGCCAGAGTTTCCAGTGTTACTGATGGGGACTGTAGCTGCAGTGATAGCTGGAGCAATATTACCTGTTTTTGGACTGTTACTCTCCAAAATGATAGATATTTTCTATGAACCACATGATGAACTTCGTAAAGATTCAAAAGTTTGGTCATTAGTATTTGTTGCGGTCGGTGTGGTATCACTCCTGGTTTATCCGGCTAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCCAGAGGATCCGGAAAGCATGTTTTGAGAAAGTAGTTCACATGGAGGTAAGTTGGTTTGATGAATCTGAGAATTCGAGTGGAGCAATTGGAGCAAGGCTCTCAACTGATGCAGCTTCCATTAGAGCATTGGTTGGGGATGCACTTGGTTTGCTGGTTCAGAATATTGCCTCAGCAATAACTGGATTGGTAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTATGGTGCCTCTACTTGGTCTAAACGGATTTCTGCAAGTCAAGTTCCTGAAAGGATTCAGTTCAGATGCAAAGAGAATGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCAGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCGGGGAAAATGTGAAGGACCAATTAAGACGGGCATAAGGCAAGGGATAATCAGTGGAGTTAGCTTTGGAATATCATTCTTTGTGCTGTACGCAGTTTATGCAGCAAGTTTTTATTTTGGAGCTCGACTGGTAGAGGATGGCAAAACAACATTCACAGATGTTTTCCGGGTCTTTTTTGCTCTCAGTTTTGCAGCTATAGGAATCTCTCAATCTGGCTCTTTGGTCCCTGATTCAGCCAAAGCAAAAACTGCTGCTGCTTCTATATTTGCCATCATTGACCGAAAGTCACAAATAGACTCAAGTGATGACTCTGGAATAACATTGGAAGAAGTGAAGGGAGAGATTGAGCTTAAGCATGTCAGTTTCAAGTATCCTACAAGACCCGATGTTCAGATATTCAGAGATCTTAGTTTGACCATTCATAGCGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGGTGTCACTGTTACAAAGATTCTATGATCCAGACTCAGGTCACATTACACTGGATGGAAAGGAAATTCAAAGCATGCAAGTTAAATGGCTAAGACAGCAGATGGGTCTGGTAAGCCAAGAGCCTGTGCTGTTTAATGACACAATCCGAGCCAATATTGCATATGGCAAAGGAGACGCAACAGAGGCAGAAATTATAGCTGCAGCAGAATTGGCAAACGCCCACAAGTTCATTAGTAGTTTGCAGAAGGGTTATGACACGGTGGTAGGTGAGAGAGGAGTTCAGTTATCTGGGGGACAGAAGCAGCGAGTGGCAATAGCACGAGCTATAGTAAAGAATCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTCCAGGATGCACTTGACCGTGTCATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCTGATTTAATCGCTGTAGTTAAGAATGGAGTGATAGCAGAGAAGGGAAAACATGAAGCATTACTGAAGAAGGGTGGCGACTATGCTTCTTTAGTTTCATTGCACACAAATGCTTCTACATCTTAA 3813 0.4351 MEGNTSLNEITSNNQESSRKSKDEPVKTVPLYKLFSFADSLDHLLMLVGTVGAVGNGISMPLMTVIFGSMINAFGGSSTTAEVVDEVSGVSLKFVYLAVGTFAASLLQLACWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFIGGFVVSFIKGWLLTVVMLSCIPLLVLSGALMSLVITKASSRGQAAYSKASSVVEQTIGSIRTVASFTGERLAITKYNQSLIKAYINGLHEAVASGLGFGMLYFVFICSYALGIWFGAKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIERKPLIDAYDTNGRKLEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTVALVGQSGSGKSTVVSLIERFYDPQSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHDELTKDPEGAYSQLIRLQEIKKSEQNAEDREKQESISQSGRHSSKRSSLLRSISLESTGVGNSGRRSLSASFGVPTSAGFIESVDEGSQDHPTTSSPPEVPLRRLGSLNKPEFPVLLMGTVAAVIAGAILPVFGLLLSKMIDIFYEPHDELRKDSKVWSLVFVAVGVVSLLVYPARFYLFGVAGGKLIQRIRKACFEKVVHMEVSWFDESENSSGAIGARLSTDAASIRALVGDALGLLVQNIASAITGLVIAFESSWQLALIILAMVPLLGLNGFLQVKFLKGFSSDAKRMYEEASQVANDAVGSIRTVASFCAEEKVMELYRGKCEGPIKTGIRQGIISGVSFGISFFVLYAVYAASFYFGARLVEDGKTTFTDVFRVFFALSFAAIGISQSGSLVPDSAKAKTAAASIFAIIDRKSQIDSSDDSGITLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVVSLLQRFYDPDSGHITLDGKEIQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLKKGGDYASLVSLHTNASTS* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2705 1270 MobiDBLite consensus disorder prediction 611 637 - -
Vra7g2705 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1263 IPR027417 -
Vra7g2705 1270 CDD ABC_MTABC3_MDL1_MDL2 369 607 - -
Vra7g2705 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1263 IPR003439 GO:0005524
Vra7g2705 1270 ProSitePatterns ABC transporters family signature. 1166 1180 IPR017871 GO:0005524
Vra7g2705 1270 Pfam ABC transporter 388 536 IPR003439 GO:0005524
Vra7g2705 1270 Pfam ABC transporter 1046 1194 IPR003439 GO:0005524
Vra7g2705 1270 MobiDBLite consensus disorder prediction 672 692 - -
Vra7g2705 1270 SUPERFAMILY ABC transporter transmembrane region 688 1007 IPR036640 GO:0005524|GO:0016021
Vra7g2705 1270 CDD ABC_MTABC3_MDL1_MDL2 1027 1261 - -
Vra7g2705 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 605 IPR003439 GO:0005524
Vra7g2705 1270 Gene3D - 1017 1269 IPR027417 -
Vra7g2705 1270 Gene3D ABC transporter type 1, transmembrane domain 92 1001 IPR036640 GO:0005524|GO:0016021
Vra7g2705 1270 PANTHER - 4 1266 - -
Vra7g2705 1270 MobiDBLite consensus disorder prediction 1 15 - -
Vra7g2705 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 696 1010 - -
Vra7g2705 1270 Pfam ABC transporter transmembrane region 46 320 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2705 1270 Pfam ABC transporter transmembrane region 705 976 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2705 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2705 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 46 330 - -
Vra7g2705 1270 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 4 1266 - -
Vra7g2705 1270 SMART AAA_5 1054 1246 IPR003593 -
Vra7g2705 1270 SMART AAA_5 396 582 IPR003593 -
Vra7g2705 1270 Gene3D - 367 620 IPR027417 -
Vra7g2705 1270 SUPERFAMILY ABC transporter transmembrane region 33 353 IPR036640 GO:0005524|GO:0016021
Vra7g2705 1270 MobiDBLite consensus disorder prediction 1 24 - -
Vra7g2705 1270 MobiDBLite consensus disorder prediction 611 628 - -
Vra7g2705 1270 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524
Vra7g2705 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 47 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2705 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 607 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2705 Vra-Chr7 47291267 47296945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2705 20 1264 Calmodulin-binding Proteins AT2G36910 45.100 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2705 K05658 - gmx:100800293 2075.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2705 7 47291267 47296945 Vra7g2705 7 47291267 47296945 ECH