Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2703 ATGGCAGTGGATACTGACTTGAATGGAGATTCTAAAAGCAAGCAAGAGTCAAAGAAGAACGAGGCCAAAGATGAACCCGCCAAAACAGTACCCTTATACAAACTTTTCTCATTTGCTGATCCTTTGGATCGTTTATTGATGTTTTTGGGAACTGTTGGTGCTTTTGGAAATGGAGTTTCCTTGCCCTTGATGACTCTGATATTCGGAAATATGATCAATGCATTTGGAGGTAACAGTAACACCAAACAAGTCGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTATCGGCACCTTTTTTGCGTCACTTTTGCAGTTGACTTGTTGGATGATCACTGGGGAGAGACAAGCCGCAAGAATTAGAGGCTTATACCTTCAAACTATTTTGAGGCAAGATGTCACCTTCTTTGACAAGGAAACAAGAACAGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAAAAGGTGGGACAGTTCTTGCAGTTCATGGCAACTTTCGTTGGAGGTTTTGTAATAGCATTCATCAGGGGATGGCTTCTAGCTGTCGTCATGCTATCCAGTATTCCACCTCTAGCTTTCTGTGGTGCTATGGTAGGCCTGGTTATTTCAAAAGCATCATCCAGGGGACAACAAGCTTATTCTAAAGCAGCAAGTGTAGTGGAGCAGACAATCGGTTCTATCAGAACTGTTGCTTCATTCACTGGGGAGAAGCAAGCTATAGTTAATTATAATCAGTCCTTAATCAAAGCTTACAAGGCTGGACTACAAGAGGCACTGGCTTCTGGTTTTGGGTTCGGTGCTCTCTACTTTGTTTTTACCTGCAGTTACGGTTTGGCTATATGGTTTGGTGCAAAAATGATAATAGAGAAAGGATATACAGGAGGGCAGGTTGTGACAGTAATGATGGCTGTTTTGACTGGCTCCATGTCTCTAGGACAGGCATCTCCAAGCTTGAGCGCTTTTGCTGCTGGAAAAGCTGCTGCCTTTAAGATGTTTGAAACAATTAAGAGGAAGCCAGAAATTGATGCTTATGATACTACGGGTCAGCAGCTTGATGACGTTCGTGGAGATATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTGATATTCAATGGATTTTCTCTTTCAATACCACGCGGCACTACGACAGCTTTGGTAGGGGAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGTCAGGTGAAGTTCTCATTGATAGTATCAACCTTAAAGAATTTCAACTGAAGTGGATCAGACAGAAAATAGGCCTAGTTAGCCAAGAACCTGTTCTTTTTACTTGCAGTATTAAAGAGAATATTGCCTATGGCAAGGATGGTGCAACTGATGAGGAAATCAGAGCTGCAGCAGAAGTAGCCAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGGCTAGACACAATGGTCGGTGAGCATGGAACTCAACTATCTGGGGGCCAGAAGCAAAGAGTTGCAATAGCGAGATCAATTTTGAAAGACCCAAGAATCCTACTTTTGGATGAAGCTACCAGTGCCCTTGATGCTGAATCTGAGAAAATTGTGCAGGAGGCATTGGACAGAATAATGATAAACCGAACAACCGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATAGCATTGCTGTTATTCATCATGGAAAAATAGTTGAAAGAGGTTCCCATGCTGAGCTCACCAAAGATCCTAACGGAGCCTATAGCCAGCTCATTAGATTACAAGAAATTAAAGGATCAGAAAAAAATGCTGAAAATGACAGAGACAAGCTAGAAAGTATAGTGCATTCTGGAAGACAATCAAGTCAAAGATCTTTCTTAAGATCTATAAGCCAAAGGTCATCAGGAGTTGGAAGCAGTCGTCATAGCTCATTCTCAGCATCACATGGTGTGCCAGTATCAATTGGCTTCTTGGAGCCTGCAAGAGGAGAACCTCAAGCACCTCCTTCAACTTCACCACAGGAAGTGCCATTATATCGCCTGGCTTATTTAAACAAGCCAGAGATTCTAGTCTTACTGGCAGGGACTCTAGCTTCAGCAGTAAATGGAGTTATACTACCCATTATTGCAGTCTTTATCTCCAAAATGATAAGTATTTTCTATGAGCCACATGATGAACTTCGTAAAGATTCAAAACTCTGGGCATTGCTATTTGTTGCACTTGGTCTGGTATCATTTACCATGATGCCATGTAGATTCTACCTTTTTGGTGTTGCTGGAGGTAAGTTGATCAAAAGGATTCGGAAAATGTGTTTTGAGAAAGTTGTTCACATGGAAGTAAGCTGGTTTGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGAGATGCACTTGGTTTGCTGGTTCAAAATCTTGCTACAGCTGTCGGCAGTTTGGTAATTGCTTTTCAAGCAAGCTGGCAGCTTGCTTTTATAGTGCTTGTTTTGGCACCGCTATTAGTACTAAATGGATACGCGCAATTCAAGTTCATGAAAGGATTCAGCGCAGATGCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGCAGTATAAGAACAGTTGCTTCTTTTTGTGCTGAAAAGAGAGTGATGGAATTATACCAGGAAAAATGTGAAGGACCGATTAAGGCAGGCATAAGGCGAGGGATAATAAGTGGAATGAGTTACGGGGCATCATTCTTCATGCTTTACGCAGTTTATGCATGCAGTTTCTATGCGGGAGCTCGACTAGTAGAGGATAGAAAATCAACATTCTCAGATGTTTTCCGTGTGTTTTTTGCATTCAGCATGGCAGCTATGGGAATCTCTCAATCTGGCTCTTTGGTACCCGATTCAACTAACTCAAAAAGTGCTGCCGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACGCAAGTGATGACTCTGGATTGACGTTGGAAGAAGTGAAGGGAGAGATTGAATTGAAAAATGTTAGTTTCAAGTATCCCACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACTATTCATAGTGGCAAGACAGTTGCACTGGTTGGGGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTGCTGAGGTTTTATGATCCAGACTCAGGTCACATTAGCCTGGATGGAAAAGAAATCAAAAGCATGCAAATAAAATGGCTAAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACAATCCGAGCCAATATTGCATATGGCAAAGGCGGGGATGCAACAGAGNCAGAAGTTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACCAGTAGTTTGCAGGAGGGTTATGACACTATAGTAGGGGAAAGAGGGATTCAGCTATCTGGAGGACAGAAACAACGGGTGGCAATNGCACGAGCAATAGTGAAGAATCCAAAAATATTACTACTAGATGAGGCGACCAGTGCACTTGATGCAGAGTCTGAAAAAGTGGTTCAGGATGCACTAGAGCGTGTTATGGTGAACAGAACCACAATAGTAGTGGCTCATAGGCTATCCACTATAAAGGGTGCGGATTTAATTGCAGTAGTAAAAAATGGTGTGATAGCAGAAAAGGGAACACATGAAGCATTACTGAGCAAGGAAGGTGATTATGCTTCCTTAGTAGCATTGCACACAAGTGCTTCTACATCCTTTTGA 3819 0.4224 MAVDTDLNGDSKSKQESKKNEAKDEPAKTVPLYKLFSFADPLDRLLMFLGTVGAFGNGVSLPLMTLIFGNMINAFGGNSNTKQVVDEVSKVSLKFVYLAIGTFFASLLQLTCWMITGERQAARIRGLYLQTILRQDVTFFDKETRTGEVVGRMSGDTVLIQDAMGEKVGQFLQFMATFVGGFVIAFIRGWLLAVVMLSSIPPLAFCGAMVGLVISKASSRGQQAYSKAASVVEQTIGSIRTVASFTGEKQAIVNYNQSLIKAYKAGLQEALASGFGFGALYFVFTCSYGLAIWFGAKMIIEKGYTGGQVVTVMMAVLTGSMSLGQASPSLSAFAAGKAAAFKMFETIKRKPEIDAYDTTGQQLDDVRGDIELREVCFSYPTRPDELIFNGFSLSIPRGTTTALVGESGSGKSTVVSLIERFYDPQSGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAEVANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARSILKDPRILLLDEATSALDAESEKIVQEALDRIMINRTTVIVAHRLSTIRNADSIAVIHHGKIVERGSHAELTKDPNGAYSQLIRLQEIKGSEKNAENDRDKLESIVHSGRQSSQRSFLRSISQRSSGVGSSRHSSFSASHGVPVSIGFLEPARGEPQAPPSTSPQEVPLYRLAYLNKPEILVLLAGTLASAVNGVILPIIAVFISKMISIFYEPHDELRKDSKLWALLFVALGLVSFTMMPCRFYLFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNLATAVGSLVIAFQASWQLAFIVLVLAPLLVLNGYAQFKFMKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEKRVMELYQEKCEGPIKAGIRRGIISGMSYGASFFMLYAVYACSFYAGARLVEDRKSTFSDVFRVFFAFSMAAMGISQSGSLVPDSTNSKSAAASVFAILDRKSQIDASDDSGLTLEEVKGEIELKNVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLLLRFYDPDSGHISLDGKEIKSMQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEXEVIAAAELANAHNFTSSLQEGYDTIVGERGIQLSGGQKQRVAXARAIVKNPKILLLDEATSALDAESEKVVQDALERVMVNRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGTHEALLSKEGDYASLVALHTSASTSF* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2703 1272 SMART AAA_5 397 585 IPR003593 -
Vra7g2703 1272 SMART AAA_5 1054 1247 IPR003593 -
Vra7g2703 1272 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524
Vra7g2703 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1027 1264 IPR003439 GO:0005524
Vra7g2703 1272 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 8 1268 - -
Vra7g2703 1272 Pfam ABC transporter 389 537 IPR003439 GO:0005524
Vra7g2703 1272 Pfam ABC transporter 1047 1195 IPR003439 GO:0005524
Vra7g2703 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 706 992 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2703 1272 MobiDBLite consensus disorder prediction 9 23 - -
Vra7g2703 1272 CDD ABC_MTABC3_MDL1_MDL2 1027 1262 - -
Vra7g2703 1272 SUPERFAMILY ABC transporter transmembrane region 693 1007 IPR036640 GO:0005524|GO:0016021
Vra7g2703 1272 SUPERFAMILY ABC transporter transmembrane region 28 354 IPR036640 GO:0005524|GO:0016021
Vra7g2703 1272 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 48 335 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2703 1272 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g2703 1272 CDD ABC_MTABC3_MDL1_MDL2 370 608 - -
Vra7g2703 1272 Gene3D - 1017 1271 IPR027417 -
Vra7g2703 1272 CDD ABC_6TM_Pgp_ABCB1_D1_like 47 331 - -
Vra7g2703 1272 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 606 IPR003439 GO:0005524
Vra7g2703 1272 PANTHER - 8 1268 - -
Vra7g2703 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Vra7g2703 1272 Coils Coil 607 627 - -
Vra7g2703 1272 Pfam ABC transporter transmembrane region 706 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2703 1272 Pfam ABC transporter transmembrane region 47 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2703 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1016 1264 IPR027417 -
Vra7g2703 1272 Gene3D - 368 621 IPR027417 -
Vra7g2703 1272 Gene3D ABC transporter type 1, transmembrane domain 93 1001 IPR036640 GO:0005524|GO:0016021
Vra7g2703 1272 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2703 Vra-Chr7 47273087 47288674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2703 21 1265 Calmodulin-binding Proteins AT2G36910 45.903 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2703 K05658 - gmx:100799760 2106.64