Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2702 ATGGTGGCAGAGGCCAGCTTGGATGCACAAAGGACTTCAACTGAGATGACAGGATCAACAAGTGATGATCCAGCAGTTCAAGGTCCTGAAAATACCCAAGAAACGGATGACAGGCAGCAGGATTCCAACAGGAGCAAGGCGAAGCATGAAAGCAATAAAACAGTACCTTTTTACAAACTTTTCTCCTTTGCAGACTATTGGGATTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGCATCGTTATGCCTTTAATGACTATACTTATTGGAGATGCTATTGATGCTTTCGGAGGAAATGCTGATAATAAACAAGAAGTAGTTCATGAAGTATCCAAGGCATCTATGAAGTTTGCAGCCATAGGTGCAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTAATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTCGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATCCAATATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTGCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGCAGCTTATTCCGAAGCAGCAACTCTAGTAGAGCGGACAATTGGTTCAATTCGAACTGTAGCGTCATTTACCGGAGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAACAAAAGCTTACAGAGTGGGAGTGCAAGAGGGTTTGGCTGTTTTGACGGGCTCTATGTCTCTGGGACAGGCATCTCCAAGCTTAGCTGCATTTGCTGCAGGACAAGCAGCAGCATTTAAAATGTTTGAAACAATAAAGAGGCAACCAGATATTGATGCTTATGACTCTTCTGGTCAACAACTAGATGACATTTCAGGAGATATAGAACTTAGGGAGGTTTGTTTTAGTTATCCTTCAAGACCGGATGAGCAGATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGCAGTGGGAAATCAACGGTTATCAGTTTAATTGAGAGATTTTATGATCCAAATGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAATTGAAGTGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAGCCAGTTCTTTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAGGAACGGGCAACAGATGAAGAAATAAGAGCAGCAGCTGCACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGAGAGCATGGAACTCAACTCTCTGGAGGTCAAAAGCAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGCGGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTTGCCCACCGCCTTAGCACAATAAGGAATGCTGATGTCATTGCCGTTATTCATCAAGGAAAAGTCATAGAAAAAGGTACACATGCAGACCTCACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCGTTAGATTGCAAGAAATTAAAAGGGAGTCAGAACAGCATGATGCAAATTACTTAAGCAGGCCAGAAAACTTGGTAGATTCTAAACGACAACCGAGCCAACGGTATTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAGCAGCAGTCAGAACTCATTCAGAATATCAAATGCCATGCCCACCACGCAAGATCACTTTGAAACCTCAGAAGGAGGATCTGGAGCTTTTCCTTCAGCAGCATCAGATAAACCTAAGGAAATTTCAATTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCATTGTTACTCTTGGGGACTCTAGCAGCAGCAGTAACAGGGGCAATACTACCCACCGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTTTGAGCCCGCAGATGAACTCCGGAAAGACTCAAAATTTTGGGCACTAATATTTGTTGCTCTTAGTGTGGGTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTAATAAAAAGAATCCGGCTAATGTGTTTTGAGAAGATAATTCACATGGAAATAAGCTGGTTCGATAAAGCCGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCCACTGATGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACTGTGGTTACAGCCTTGGTAATTGCCTTTGACGCAAACTGGCAGCTTTCTCTCATAGTTCTTGTTTTGGTACCTCTAATAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACGGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGAAGTTATACCATACAAAATGTGCAGGACCCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACGGGTTTTGGGTTATCACTGTTCTTTCTGTTCTCGGTTTATGCATGTAGTTTTTATGCTGGGGCTAAACTTGTAGAGAAGGGAAAAACATCAATCTCAGACGTTTTCCGTGTATTTTTTTCTCTCTCGATGGCAGCTATAGCAATGTCACAATCTGGCTTCATGACCCCAGCTGCAAGTAAAGCAGAAAGTTCTGCAGCTTCTGTATTTGCTATCCTTGATCAGAAATCAATAATAGATACCAGTGACGATTCAGGAATGACATTGGAACAAGTGAAGGGAGATATCGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGGCCCCATGTTCCTGTATTCAAAGATCTTTCCTTGACCATTCACGCAGGAGAGACAGTTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCAACTGTGATCTCCTTGTTACAAAGATTTTACGACCCAGATTCAGGTCAGATTACACTAGATGGAACAGAAATCCAAAAGCTAAAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAGGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTGGGGGAGAGAGGGATTCAACTGTCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTGGACAGAACCACAATTGTGGTTGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGCCATTGCAGAGAAAGGAAAGCACGACACCTTGCTTAACAAAGGTGGTGCATATGATTCGTTGGTAGCACTGCATATCACTGCTGCTTCATCATAG 3780 0.428 MVAEASLDAQRTSTEMTGSTSDDPAVQGPENTQETDDRQQDSNRSKAKHESNKTVPFYKLFSFADYWDCLLMLVGAISAVANGIVMPLMTILIGDAIDAFGGNADNKQEVVHEVSKASMKFAAIGAGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATLVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRVGVQEGLAVLTGSMSLGQASPSLAAFAAGQAAAFKMFETIKRQPDIDAYDSSGQQLDDISGDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPNAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKERATDEEIRAAAALANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGKVIEKGTHADLTKDPDGAFSQLVRLQEIKRESEQHDANYLSRPENLVDSKRQPSQRYSFPQSLSRGSSGRGSSSQNSFRISNAMPTTQDHFETSEGGSGAFPSAASDKPKEISILRIAYLNKPEIPLLLLGTLAAAVTGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVALSVGAFIFLPLRSYFFSVAGCKLIKRIRLMCFEKIIHMEISWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVVTALVIAFDANWQLSLIVLVLVPLIVLNGHLQMKSMQGFSTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMKLYHTKCAGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGAKLVEKGKTSISDVFRVFFSLSMAAIAMSQSGFMTPAASKAESSAASVFAILDQKSIIDTSDDSGMTLEQVKGDIEFHHVTFKYPTRPHVPVFKDLSLTIHAGETVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLKLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGAIAEKGKHDTLLNKGGAYDSLVALHITAASS* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2702 1259 MobiDBLite consensus disorder prediction 34 49 - -
Vra7g2702 1259 CDD ABC_MTABC3_MDL1_MDL2 353 591 - -
Vra7g2702 1259 CDD ABC_MTABC3_MDL1_MDL2 1015 1250 - -
Vra7g2702 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 318 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2702 1259 MobiDBLite consensus disorder prediction 7 33 - -
Vra7g2702 1259 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524
Vra7g2702 1259 Gene3D - 343 603 IPR027417 -
Vra7g2702 1259 Gene3D - 1005 1257 IPR027417 -
Vra7g2702 1259 SUPERFAMILY ABC transporter transmembrane region 60 316 IPR036640 GO:0005524|GO:0016021
Vra7g2702 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1004 1252 IPR027417 -
Vra7g2702 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 591 IPR027417 -
Vra7g2702 1259 Pfam ABC transporter 372 520 IPR003439 GO:0005524
Vra7g2702 1259 Pfam ABC transporter 1034 1183 IPR003439 GO:0005524
Vra7g2702 1259 SUPERFAMILY ABC transporter transmembrane region 681 995 IPR036640 GO:0005524|GO:0016021
Vra7g2702 1259 MobiDBLite consensus disorder prediction 599 645 - -
Vra7g2702 1259 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524
Vra7g2702 1259 PANTHER - 297 1255 - -
Vra7g2702 1259 PANTHER - 39 298 - -
Vra7g2702 1259 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 694 980 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2702 1259 MobiDBLite consensus disorder prediction 610 645 - -
Vra7g2702 1259 SMART AAA_5 1042 1235 IPR003593 -
Vra7g2702 1259 SMART AAA_5 380 552 IPR003593 -
Vra7g2702 1259 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 313 - -
Vra7g2702 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Vra7g2702 1259 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 39 298 - -
Vra7g2702 1259 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 297 1255 - -
Vra7g2702 1259 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1015 1252 IPR003439 GO:0005524
Vra7g2702 1259 Gene3D ABC transporter type 1, transmembrane domain 639 1003 IPR036640 GO:0005524|GO:0016021
Vra7g2702 1259 Gene3D ABC transporter type 1, transmembrane domain 51 299 IPR036640 GO:0005524|GO:0016021
Vra7g2702 1259 MobiDBLite consensus disorder prediction 1 49 - -
Vra7g2702 1259 Pfam ABC transporter transmembrane region 73 297 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2702 1259 Pfam ABC transporter transmembrane region 693 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2702 1259 CDD ABC_6TM_Pgp_ABCB1_D2_like 683 998 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2702 Vra-Chr7 47261793 47268088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2702 53 1253 Calmodulin-binding Proteins AT2G36910 42.709 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2702 K05658 - gmx:100777713 2021.9