Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2701 ATGACTTCAATTGAGATGATAGCAACAAGTGATCAAACACAAGTTCAAGGGTCCAAATATACAACAGAAAAGATGGTTGACATGATGCAGGATTCCAAGGAAAACAAGGTGAAGAATGAAATCAACAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTCAGGACTCTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCTGTACGCCTTCACTGGCTATATTTGTTGGAGATGCGATTGATGCCTTGGGAGGACATGTTGATAATAAACAAGTACTTCATGAAGTTTCTAAGGTGTCTCTGAAGATTGCATCCATAGGCGCAGTTGCCTTTCTAGCAGCATTCTTGCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGTTTCTTTGACAAGGAAACCAACAGTGGAGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAGTTCATACAGAGTGTGTCAAGTTTTCTAGGAGCCCTAACCTTAGCCTTCACCAAGGGTTGGCTTCTGAGCCTTGTCCTTCTTTCTTCTGTTCCTCTTCTTGTCCTCTCTGGTTCCATGATGAGCTTAGCTTTTTCAAAGATGGCATCTCGAGGACAAGCTGCTTATTCTGAGGCAGCAACTGTAGTGGAGCAGACAATTGGTTCAATTCGAACTGTTGCGTCATTTACAGGTGAGAAGCAAGCTATAGCTCAATACAATCGATACTTAACTAAAGCTTACAGGATTTCAGTGCAAGAGGGCGTGGTTAGTGGTTTTGGCATGGCTTCATTTCAACTATTTTCAATCTGCACTTATGGTTTGGCAGTATGGTTTGGAGGGAAGATGGTATTAGAGAAAGGTTACTCAGGAGGACAAGTCATTGGTGTGTTTTGGGCAATAACGACTGGTTGTTTGCGTCTGGGGCAGGCATCTCCAAGCTTAACAGCATTTTCTGCAGGAAAAGCTGCTGCCTTTAAAATGTTTGAAACAATAAAGAGGCAGCCAGATATTGATGCTTATGACTCTTCTGGTCAACAACTAGATGACATTTCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCTGATGAACAAATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGCAGTGGGAAATCAACAGTTATTAGTTTGATTGAAAGATTTTATGATCCGCAAACCGGTGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGCCTATGGTAAGGATGGGGCAACAGAAGAAGAAATCAGAGCTGCAGCTGAGCTTGCTAATGCTATTAAGTTCATTGATGAATTTCAACATGGGCTTGACACAATGGTCGGCGAGCGTGGAACTCAGCTCTCTGGTGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTAAAAGACCCAAGAATTCTTCTCCTTGATGAAGCCACAAGTGCTCTTGATGTAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTAGCCCATCGCTTAAGCACGATCAGGAATTCTGATATCATTGCAGTTATTCATAAAGGAAAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAATGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATTAGAAGGGAGTCAGAACAGCATGAAGCAAACGACTCAGGCCGGCCAGAAAACTTAATAGATTCTGAACAACAATTGAGCCAACAATTTTCTTTGCCTCTAACTTTCAGCGATCAATCATCTGGAAGAGAAAACAGCAGTCAGCACTCATTCAAAACGTCCAATGCCATGCCTATCACACCAGATCGCTTTCAAACACCAAAAGAATGGCCTGAAGTTCTTCCGTCAGCAACATCACATACGCCTCGAGAAGTTTCGTTTTTCCGCATTGCTTATCTTAACAAACCTGAAATCCTAGTGTTACTCATGGGAACTCTAGCAGCCGCAGCAACTGGCGCAGTACAACCCACTATGGGGCTTTTGCTTTCTAACATGATAAACACTTTCCTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGTCATTAATATTTGTTGCCCTTGGTATCGCTGCCTTCATACTTATTCCATTAAGGTCCTACTTCTTTGGTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGCTTTGAGAAAATAATTCACATGGAAATGAGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGTTCTTGGAGCAAGGCTGTCAACTGATGCAGCTTCCATTAGAACTATGGTTGGGGATGCTCTTGGTTTGTTGATTCAAGATATCTCGACAGCATTGACAGCCTTGGTAATTGCCTTTCAGGCAAACTGCCAACTTTCTCTAATCATTCTAGTTTTGGTACCACTGGTGTTACTAAATGGATATTTGCAAATGAAGTCAATGCAATGTTTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCAAATGAAGCAGTAGGGAATATAAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAACAAATGTTTAGGACCAATCAAGACAAGTATAAAGCTAGGTTTAATCAGCGGAGCCGGCTTTGGTCTATCAATCTTCTTTCTGTACGCTTTTAATGCATGCGGTTTTTATGTTGGAGCAAGACTAATTGAGAATGGCAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGTTATAATAATGGCAGCCATAGCAATGTCGCAATCTGGCTTCCTGACCCCAGCTGCCAGTAAAGCAAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAGAATAGATCCCAGTGATGAATCTAGAATGACATTACAAGAAGTGAAGGGAGAGATTGAGTTTCACCATGTCACTTTCAAGTATCCAACAAGGCCTAATGCTCTTGTACTCAAAGATCTTTCCTTGACTATTCATGCAGGAGAGACTGTTGCTCTGGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATGCTCTCACTGTTACAGAGATTTTACGACCCAGATTCAGGTCAAATCACACTGGATGGAACAGAAGTGCAAAAGCTACAACTTAAATGGCTTAGGCAGCAGATGGGTATGGTGAGCCAGGAGCCTGTGTTGTTTGATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTGTAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGTGAGAGGGATTCAATTATCAGGAGGACAGAAGCAGAGGGTGGCAATTGCAAGATCCATTGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGTGAGGCTGGATAGAACCACAGTTGTGGTGGCTCACAGGTTATCCACAATAAAGGATGCAGATTCAATTGCAGTGGTTGAATATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTACTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTGCATATCAGTGCTTCTTCTTCATAA 3876 0.4154 MTSIEMIATSDQTQVQGSKYTTEKMVDMMQDSKENKVKNEINKTVPFYKLFSFADSQDSLLMLVGAISAVANGICTPSLAIFVGDAIDALGGHVDNKQVLHEVSKVSLKIASIGAVAFLAAFLQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQSVSSFLGALTLAFTKGWLLSLVLLSSVPLLVLSGSMMSLAFSKMASRGQAAYSEAATVVEQTIGSIRTVASFTGEKQAIAQYNRYLTKAYRISVQEGVVSGFGMASFQLFSICTYGLAVWFGGKMVLEKGYSGGQVIGVFWAITTGCLRLGQASPSLTAFSAGKAAAFKMFETIKRQPDIDAYDSSGQQLDDISGDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQTGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKDGATEEEIRAAAELANAIKFIDEFQHGLDTMVGERGTQLSGGQKQRISIARAILKDPRILLLDEATSALDVESERVVQETLDRIMINRTTVIVAHRLSTIRNSDIIAVIHKGKLQEKGSYAELTNDPDGAFSQLIRLQEIRRESEQHEANDSGRPENLIDSEQQLSQQFSLPLTFSDQSSGRENSSQHSFKTSNAMPITPDRFQTPKEWPEVLPSATSHTPREVSFFRIAYLNKPEILVLLMGTLAAAATGAVQPTMGLLLSNMINTFLEPADELRKDSKFWSLIFVALGIAAFILIPLRSYFFGVAGSKLIKRIRLMCFEKIIHMEMSWFDKAENSSGVLGARLSTDAASIRTMVGDALGLLIQDISTALTALVIAFQANCQLSLIILVLVPLVLLNGYLQMKSMQCFSTDAKKLYEEASQVANEAVGNIRTVASFCAEEKVMELYQNKCLGPIKTSIKLGLISGAGFGLSIFFLYAFNACGFYVGARLIENGKASFSDVFRVFYVIIMAAIAMSQSGFLTPAASKAKCSVASIFAILDQKSRIDPSDESRMTLQEVKGEIEFHHVTFKYPTRPNALVLKDLSLTIHAGETVALVGKSGSGKSTMLSLLQRFYDPDSGQITLDGTEVQKLQLKWLRQQMGMVSQEPVLFDDTIRANIAYGKGGDATEAEIVAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKSPKILLLDEATSALDAESERMVQDALDRVRLDRTTVVVAHRLSTIKDADSIAVVEYGVIAEKGKHETLLNKGGTYASLVALHISASSS* 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2701 1291 MobiDBLite consensus disorder prediction 661 683 - -
Vra7g2701 1291 Pfam ABC transporter 1065 1215 IPR003439 GO:0005524
Vra7g2701 1291 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Vra7g2701 1291 CDD ABC_MTABC3_MDL1_MDL2 1047 1282 - -
Vra7g2701 1291 Pfam ABC transporter transmembrane region 63 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2701 1291 Pfam ABC transporter transmembrane region 725 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2701 1291 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 28 1287 - -
Vra7g2701 1291 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Vra7g2701 1291 Gene3D ABC transporter type 1, transmembrane domain 35 364 IPR036640 GO:0005524|GO:0016021
Vra7g2701 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 1012 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2701 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Vra7g2701 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1284 IPR027417 -
Vra7g2701 1291 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 358 - -
Vra7g2701 1291 Gene3D - 1045 1284 IPR027417 -
Vra7g2701 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Vra7g2701 1291 Gene3D ABC transporter type 1, transmembrane domain 669 891 IPR036640 GO:0005524|GO:0016021
Vra7g2701 1291 Gene3D ABC transporter type 1, transmembrane domain 941 1044 IPR036640 GO:0005524|GO:0016021
Vra7g2701 1291 ProSitePatterns ABC transporters family signature. 1187 1201 IPR017871 GO:0005524
Vra7g2701 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2701 1291 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524
Vra7g2701 1291 SUPERFAMILY ABC transporter transmembrane region 49 369 IPR036640 GO:0005524|GO:0016021
Vra7g2701 1291 SMART AAA_5 1074 1267 IPR003593 -
Vra7g2701 1291 SMART AAA_5 412 584 IPR003593 -
Vra7g2701 1291 PANTHER - 28 1287 - -
Vra7g2701 1291 SUPERFAMILY ABC transporter transmembrane region 713 1031 IPR036640 GO:0005524|GO:0016021
Vra7g2701 1291 Gene3D - 377 641 IPR027417 -
Vra7g2701 1291 CDD ABC_6TM_Pgp_ABCB1_D2_like 715 1030 - -
Vra7g2701 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1284 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2701 Vra-Chr7 47251938 47257604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2701 34 1285 Calmodulin-binding Proteins AT2G36910 42.189 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2701 K05658 - gmx:100777713 1979.14