Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2700 ATGGCAAGGCAGCAAGATTCCAAGAAGAACAAGGTGAAGGATGAAAGCAACAAAACAGTACCCTATTACAAACTTTTTTCATTTGCAGACTCTTCAGATTATCTACTGATGTTTGTCGGGATAGTAAGCGCTGTTGGAAATGGAATAACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGATGCTTTTACACAAAATGGTAACACTAAACACGTAGTTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCAGTACTAGGTGTAGCTTCCTTTCTGACAGCTTTTCTACAGGTGGCTTGTTGGGTGTCCACCGGGGAGAGGCAGGCAGCGAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTCGACAAGGAAACCAACACTGCTGAGGTTGTTGGAAGGATATCAGGTGACACATTTCTTATCCAAGAAGCCATGGGAGACAAGGCAGGAAAATTCATAGAGTGTGTGGCATGCTTTTTAGGAGGTATAGCCATAGGATTCATCAAGGGTTGGCTTCTAACTCTTGTCCTTCTATCTTGTGTTCCACCTCTTGTTTTCTCCGGTTCCATAATGAGCTTTGCGTACGCAAAGTTGGCATCCCGCGGGCAAGCAGCTTATTCTGAAGCAGCAACCGTAGTAGATCGCACAATTGGTTCAATTCGAACTGTTGCATCATTTACGGGCGAGAATCAAGCCATAGCTCAATACAGTCAATCCTTAACCGATGCTTACAGGACTGCAGTGCAAGACGGAATGGCTGCTGGTTTAGGCCTTGGTTCAATCCGTTTATTTATTAACAGTAGCTTTGCATTGGCTGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGCTATACAGGAGGTGAAGTCATGAGTATATTTTACGCGCTATTTTTTGGCTCCATGTTGTTGGGACAGGCTTTTACAAGTTTAACTGCATTCATTGCAGGACAGGCTGCCGCCTTTGAAATATTTGAAACAATAAACAGGCAGCCAAAAATTGATGCTTATGATACTGCAGGTCGACAGGTAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTTGTTATCCTTCAAGGCCAGATGAATTGATACTCAATGGATGTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGCAGTGGGAAATCAACAGTTATTAGTCTGATTGAGAGATTTTATGATCCACAAGCCGGAGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATCAAAGAAAATATTGCTTATGGTAAGGAGGGGGCAACAGATGAAGAAATCAGAGCTGCAATTGAACTTGCTAATGCAGCCAAATTCATAGATAGATTTCCGCATGGACATGATATGATTGTCGGTGAGCATGGTACACAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCACGGGCAATTCTAAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGTGCCCTTGATGCTGAGTCTGAGAGAGTGGTCCAAGAGACACTGGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACATCGCCTAAACACAATAAGGAATGCCGATACAATTGCTGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTGTCCATGCTGACCTCATTAAAGATCCTGATGGGGCTTACAGCCAACTCATTAGATTGCAAGAAATTAGGCACTCAGATGTTACAGATGACTCGGGAAAGCTAAAAAGCAGCAGTCGTCACTCATGCAGAATATCAAATGATATGCCTACTACACTTAATCTCTTGAAAACATCAGAAGGAGAACCTGAAGTTCTTACTCCAGCAGCACCGCATTCCTCTCCAAAAGTCTCGTTCCTTCACCTTGCTTATCTTAACAAGCCTGAAATTGCAGTGTTAGTCCTAGGGACTCTAGCAGCCATAGTAACTGGGGCCATACTTCCTCTTGTGGGGTTTCTTACCGCCTGCATGATAAATACTTTCTCTGAGCCAGCAAATGAACTTCGTAAAGACTCAAAGTTTTGGGCTGCAGTATTTATAGCCCTTGGAGCCGCTGGCTTCATATTTCATCCACTAAGGTCCTACTTTTTTGCTGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATTATTCACATGGAAGTAGCCTGGTTTGACAAAGCTGAGCATTCAAGTGGAGTACTGGGAGCAAGGCTGTCAATTGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTAAGTTTGATGGTTCAAGATATTGCTACAGTAGTTATAGCCTTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCACTATTATTAGTAAACGGACAAGTGCAACTGGGGTCCATGCAAGGAGTTGTCACTGATGCAAAGAAACTCTACGAAGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTAGCTTCTTTCTGTGCAGAAGAAAAGATGATGAAGTTATACCAGAAGAAATGTTCAGGGACCATCCAGACAAGTATAAGGCAAGGTTTAGTCAGCGGAACAAGTTTTGGGATATCACTCTTCTTGGTGTTCTCGGTTAATGCAGCCGGCTTTTATGCTGCAGCCCGACTTGTCGAGAGCGGGAAAACATCAATCTCAGATGTTTTCCGAGTATTTTTCACTCTCAAACTGGCAGCAATAGCAATGACACAATCTGGCTTCATGGCCCCAGGTGCAAGTAAAGCAAAAAGTGCTCTTGCTTCTATATATGCTATTCTTGAGCAGAAATCAAATATAGACCCCAGTGATGAGTCTGGAATGATGTTGCAAGAAGTGAGAGGAGAGATTGAGTTCCACCACGTCACTTTCAGGTATCCAACCAGGCCTGATGTGCTTGTATTCAGAGATCTTTCCTTGACTATTAACGCAGGAGAGACAATTGCTCTAGCTGGAGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTATTGCAAAGATTTTATGACCCAGATTCAGGCCAGATAACACTAGATGGAACTGAAATAAAAAATCTACAACTCAAATGGTTTAGGAAGCAGATGGGCCTGGTAAGCCAGGAACCTATACTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCAGCAGCAGAACTGGCGAATGCGCACAAATTCATTAGCAGTTTGCAACAGGGTTACGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCGGGAGGACAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACTAGTGCACTAGATGCTGAGTCTGAAAGAGTCGTTCAGGATGCACTTGACCGAGTGAGGGTGGACAAAACAACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAACATGGAGTCATTGCAGAGCAAGGAAAGCATGACACTTTGATTAACAAGGGTGGTATCTATGCTTCGTTAGTAGGCTTGCACACAACTCATGCTTCATCTTAG 3711 0.4282 MARQQDSKKNKVKDESNKTVPYYKLFSFADSSDYLLMFVGIVSAVGNGITKASTNIVMGEAIDAFTQNGNTKHVVHEVSKVSLKFAVLGVASFLTAFLQVACWVSTGERQAARIRGLYLKAILRQDISFFDKETNTAEVVGRISGDTFLIQEAMGDKAGKFIECVACFLGGIAIGFIKGWLLTLVLLSCVPPLVFSGSIMSFAYAKLASRGQAAYSEAATVVDRTIGSIRTVASFTGENQAIAQYSQSLTDAYRTAVQDGMAAGLGLGSIRLFINSSFALAVWFGGKMVLEKGYTGGEVMSIFYALFFGSMLLGQAFTSLTAFIAGQAAAFEIFETINRQPKIDAYDTAGRQVDDISGDIELREVCFCYPSRPDELILNGCSISISSGTTAALVGKSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKEGATDEEIRAAIELANAAKFIDRFPHGHDMIVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGVHADLIKDPDGAYSQLIRLQEIRHSDVTDDSGKLKSSSRHSCRISNDMPTTLNLLKTSEGEPEVLTPAAPHSSPKVSFLHLAYLNKPEIAVLVLGTLAAIVTGAILPLVGFLTACMINTFSEPANELRKDSKFWAAVFIALGAAGFIFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVAWFDKAEHSSGVLGARLSIDVASIRTFVGDALSLMVQDIATVVIALAIAFEANWQLSLIILVLLPLLLVNGQVQLGSMQGVVTDAKKLYEEASQVANDAVGNIRTVASFCAEEKMMKLYQKKCSGTIQTSIRQGLVSGTSFGISLFLVFSVNAAGFYAAARLVESGKTSISDVFRVFFTLKLAAIAMTQSGFMAPGASKAKSALASIYAILEQKSNIDPSDESGMMLQEVRGEIEFHHVTFRYPTRPDVLVFRDLSLTINAGETIALAGESGSGKSTVISLLQRFYDPDSGQITLDGTEIKNLQLKWFRKQMGLVSQEPILFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDKTTIVVAHRLSTIKDADSIAVVEHGVIAEQGKHDTLINKGGIYASLVGLHTTHASS* 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2700 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Vra7g2700 1236 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 333 - -
Vra7g2700 1236 Pfam ABC transporter transmembrane region 670 938 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2700 1236 Pfam ABC transporter transmembrane region 37 311 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2700 1236 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Vra7g2700 1236 Pfam ABC transporter 1011 1160 IPR003439 GO:0005524
Vra7g2700 1236 Gene3D ABC transporter type 1, transmembrane domain 24 961 IPR036640 GO:0005524|GO:0016021
Vra7g2700 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 992 1229 IPR003439 GO:0005524
Vra7g2700 1236 SUPERFAMILY ABC transporter transmembrane region 660 976 IPR036640 GO:0005524|GO:0016021
Vra7g2700 1236 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 13 610 IPR039421 -
Vra7g2700 1236 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 614 1233 IPR039421 -
Vra7g2700 1236 ProSitePatterns ABC transporters family signature. 1132 1146 IPR017871 GO:0005524
Vra7g2700 1236 CDD ABC_6TM_Pgp_ABCB1_D2_like 660 975 - -
Vra7g2700 1236 Gene3D - 982 1235 IPR027417 -
Vra7g2700 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
Vra7g2700 1236 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 13 610 - -
Vra7g2700 1236 PANTHER TRANSPORTER ABC DOMAIN PROTEIN 614 1233 - -
Vra7g2700 1236 SUPERFAMILY ABC transporter transmembrane region 24 344 IPR036640 GO:0005524|GO:0016021
Vra7g2700 1236 Gene3D - 350 599 IPR027417 -
Vra7g2700 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 981 1229 IPR027417 -
Vra7g2700 1236 SMART AAA_5 387 573 IPR003593 -
Vra7g2700 1236 SMART AAA_5 1019 1212 IPR003593 -
Vra7g2700 1236 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Vra7g2700 1236 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Vra7g2700 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 671 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra7g2700 1236 CDD ABC_MTABC3_MDL1_MDL2 992 1227 - -
Vra7g2700 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2700 Vra-Chr7 47238813 47247630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2700 7 605 Calmodulin-binding Proteins AT2G36910 37.209 5.08e-113 382