Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2697 ATGGATGCGGAGGACTGGGATTTGAGTGCAGAGGACCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCCTTCTTCTCCACTCCAACATCACAATTCTGCAACGGCAACAACGAATCACTTCCCACCAAAACCCCTTCCCAATTCGCTTCCCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAACATTGCCCACGTCATTGAAACCAGGGACAAACAACGACAAACAATCCAAAAATGGACCGATAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAAAATCCCTAAATCTTCTTGGAATGCAAAAGAACGGTTATGGGTATTCCCACTGTCTTCTTTGTCAGAGGCGGAGAAGTTTCTTGGAGATGTATCAAGTTATAATGTTCAGGTTGAAAACTTAGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGTTACTGCAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGACGTGTTCTCTTAGCAGATGAAATGGGACTAGGGAAAACTTTGCAAGCGATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCTTCACTGCGTTTGCAATGGGCTTGTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTAATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAACATCGTATCTTCAAGTTCTAAAAACAGCATTCGTTTGAATGGACTATTCAACATCATCTCATATGAGTTGGTGCCAAAGCTGCAGAATTTGCTTACGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAAGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCAGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCATAATTTGATGAAGGCTACAGTGCTGATTCGCAGGCTTAAAAAAGATGTCCTTTCTGAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCAAGAGTTGAAAATGGTAAAAGCCAAAATTAAGGATGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGTCAATGCTTGATTCGATACATGAGTTTCTTCGTAAGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCAGCTGCTTCCAGACAGCAATTGGTCACTGAGTTTCAGGAAAAAGATTCTACAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTGGAGGTCTCTGCTACTCTGCCAGAGAGTAGCCCTTCAAAGCAAAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACTCGGATAGCCCTTCAAAGAAAACGCTAGACCAGTTTGTTCGAAGATGTGATAAGATGGATGGGTTGGAACATGAGCCCAAACGTCTCCGAAACTGA 2109 0.4158 MDAEDWDLSAEDLDSLERDAFQKIAQLRNPPPPSSPLQHHNSATATTNHFPPKPLPNSLPQTVGASSQGARTLPTSLKPGTNNDKQSKNGPIKFSVKFFLHSSGNIAAKFQYDQVVIAAFRKIPKSSWNAKERLWVFPLSSLSEAEKFLGDVSSYNVQVENLDPLVQRAIAAASAVPDLQDRYCKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWACMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSSKNSIRLNGLFNIISYELVPKLQNLLTTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFQELKMVKAKIKDAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQSMLDSIHEFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSTKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSATLPESSPSKQKTLDQFIRRPENSDSPSKKTLDQFVRRCDKMDGLEHEPKRLRN* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2697 702 Gene3D - 436 690 IPR027417 -
Vra7g2697 702 MobiDBLite consensus disorder prediction 59 89 - -
Vra7g2697 702 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 673 IPR030101 GO:0006281|GO:0031297|GO:0036310
Vra7g2697 702 Pfam Helicase conserved C-terminal domain 499 603 IPR001650 -
Vra7g2697 702 Gene3D - 166 423 IPR038718 -
Vra7g2697 702 ProSiteProfiles HARP domain profile. 88 164 IPR010003 -
Vra7g2697 702 Coils Coil 446 466 - -
Vra7g2697 702 MobiDBLite consensus disorder prediction 25 89 - -
Vra7g2697 702 MobiDBLite consensus disorder prediction 663 683 - -
Vra7g2697 702 SMART ultradead3 190 383 IPR014001 -
Vra7g2697 702 SMART helicmild6 520 603 IPR001650 -
Vra7g2697 702 CDD SF2_C_SNF 490 614 - -
Vra7g2697 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 375 IPR014001 -
Vra7g2697 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 646 IPR001650 -
Vra7g2697 702 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 673 - -
Vra7g2697 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 417 IPR027417 -
Vra7g2697 702 MobiDBLite consensus disorder prediction 647 683 - -
Vra7g2697 702 CDD DEXHc_HARP_SMARCAL1 194 417 - -
Vra7g2697 702 MobiDBLite consensus disorder prediction 38 52 - -
Vra7g2697 702 Pfam SNF2-related domain 212 473 IPR000330 GO:0005524|GO:0140658
Vra7g2697 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 645 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2697 Vra-Chr7 47212642 47223666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2697 462 623 RAD5 or RAD16-like Gene Family AT1G05120 31.138 1.93e-18 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vra7g2697 SNF2_N 1.2e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2697 K14440 - gmx:100778246 1199.11