Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2694 ATGTGGTTGAACTATGCCTACATATCTATGTTATTGATGGTTTATTTTCTGATTGAACAGATGCAGATCTTTGTGAAAACTTTGACTGGCAAGACCATAACCCTTGAAGTAGAATCGTCTGACACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATCCCTCCGGATCAGCAAAGGCTGATTTTTGCTGGTAAACAGCTTGAGGATGGGAGAACCCTGGCCGATTACAATATTCAGAAGGAGTCCACCCTCCACTTGGTGCTTCGGTTGAGGGGTGGTATGCAGATTTTTGTAAAGACTTTGACTGGAAAAACCATAACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTCAAGGCGAAGATCCAAGACAAAGAGGGCATCCCTCCGGATCAACAGAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGAAGGACCCTTGCTGATTACAATATTCAGAAGGAGTCAACCCTTCACTTGGTGCTTCGTTTGAGAGGTGGTATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATAACCTTGGAAGTGGAGAGTTCAGATACAATTGACAATGTGAAAACAAAGATTCAGGATAAGGAGGGTATACCCCCAGATCAACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAACATACAGAAAGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAGATTTTTGTGAAGACTTTAACCGGGAAAACCATAACTCTGGAGGTTGAAAGCTCTGACACTATTGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATTCCACCGGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAACATCCAGAAGGAATCCACTCTACACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAAACAATTACCTTGGAGGTGGAAAGCTCTGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATACCACCAGATCAACAGAGGCTTATTTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAACATTCAAAAAGAATCCACCCTTCATCTTGTCCTTCGCCTTCGTGGCGGCATGCAAATCTTTGTCAAGACTTTGACTGGGAAAACCATAACCTTAGAGGTGGAGAGTTCAGATACCATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATCCCTCCAGACCAGCAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCGGATTACAACATCCAGAAAGAATCTACCCTGCACTTGGTTTTGAGGCTTCGTGGTGGAATGCAAATTTTTGTAAAGACGTTGACAGGAAAGACCATTACTTTGGAAGTTGAAAGCTCTGATACCATTGATAATGTCAAGNCAAAGATCCAGGACAAAGAGGGNATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGAACCCTTGCTGATTATAACATCCAGAAGGAATCTACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAAGTGGAATCCTCCGATACCATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAAGGAATCCCTCCGGATCAGCAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGACGGTAGAACCCTTGCTGATTACAACATTCAGAAGGAGTCCACGCTCCACTTGGTTCTTCGTTTGAGGGGTGGCATGCAAATCTTTGTCAAGACTTTGACCGGGAAAACTATTACCTTGGAGGTGGAGAGTTCAGATACCATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTTGAAGATGGAAGAACCCTTGCGGATTATAATATCCAGAAAGAGTCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATTTTTGTCAAGACTCTGACGGGAAAAACCATTACCTTGGAGGTTGAAAGTTCTGATACTATTGATAATGTAAAGGCTAAGATACAGGACAAAGAGGGGATTCCACCAGACCAGCAAAGGCTTATCTTTGCTGGGAAGCAGCTAGAAGATGGGCGTACCCTTGCTGATTATAACATCCAGAAGGAATCCACTCTTCATTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATTTTTGTGAAGACTTTAACTGGGAAAACCATAACATTGGAGGTTGAAAGCTCTGACACTATAGACAATGTAAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCTGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTGGAAGATGGGCGTACCCTTGCAGATTATAACATTCAGAAGGAATCCACTCTGCACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATTTTTGTGAAGACTCTGACAGGAAAAACCATTACCTTAGAGGTGGAGAGCTCTGATACAATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGAATCCCACCAGATCAGCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGTCGTACCTTGGCAGACTACAATATTCAGAAGGAATCTACCCTGCATCTTGTTCTTCGCCTTCGCGGTGGTTTCTAA 2802 0.4461 MWLNYAYISMLLMVYFLIEQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKXKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 551 628 IPR029071 -
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 883 908 IPR019954 -
Vra7g2694 933 CDD Ubl_ubiquitin 553 628 - -
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 503 528 IPR019954 -
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 123 148 IPR019954 -
Vra7g2694 933 SMART ubq_7 781 852 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 21 92 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 97 168 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 249 320 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 857 928 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 477 548 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 325 396 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 629 700 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 401 472 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 705 776 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 173 244 IPR000626 GO:0005515
Vra7g2694 933 SMART ubq_7 553 624 IPR000626 GO:0005515
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 96 172 IPR029071 -
Vra7g2694 933 CDD Ubl_ubiquitin 21 96 - -
Vra7g2694 933 CDD Ubl_ubiquitin 857 932 - -
Vra7g2694 933 CDD Ubl_ubiquitin 325 400 - -
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 199 224 IPR019954 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 856 932 IPR029071 -
Vra7g2694 933 CDD Ubl_ubiquitin 477 552 - -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 249 324 IPR000626 GO:0005515
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 97 172 IPR000626 GO:0005515
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 427 452 IPR019954 -
Vra7g2694 933 CDD Ubl_ubiquitin 781 856 - -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 476 552 IPR029071 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 172 248 IPR029071 -
Vra7g2694 933 CDD Ubl_ubiquitin 97 172 - -
Vra7g2694 933 PRINTS Ubiquitin signature 31 51 IPR019956 -
Vra7g2694 933 PRINTS Ubiquitin signature 52 72 IPR019956 -
Vra7g2694 933 PRINTS Ubiquitin signature 73 94 IPR019956 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 324 400 IPR029071 -
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 655 680 IPR019954 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 400 476 IPR029071 -
Vra7g2694 933 CDD Ubl_ubiquitin 401 476 - -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 780 856 IPR029071 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 16 96 IPR029071 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 703 780 IPR029071 -
Vra7g2694 933 PANTHER UBIQUITIN 9 227 - -
Vra7g2694 933 PANTHER UBIQUITIN 225 454 - -
Vra7g2694 933 PANTHER UBIQUITIN 608 835 - -
Vra7g2694 933 PANTHER UBIQUITIN 531 759 - -
Vra7g2694 933 PANTHER UBIQUITIN 476 683 - -
Vra7g2694 933 PANTHER UBIQUITIN 833 932 - -
Vra7g2694 933 PANTHER UBIQUITIN 96 303 - -
Vra7g2694 933 PANTHER UBIQUITIN 377 606 - -
Vra7g2694 933 PANTHER UBIQUITIN 172 378 - -
Vra7g2694 933 PANTHER UBIQUITIN 305 531 - -
Vra7g2694 933 PANTHER UBIQUITIN 685 910 - -
Vra7g2694 933 Gene3D - 97 172 - -
Vra7g2694 933 Gene3D - 325 400 - -
Vra7g2694 933 Gene3D - 173 248 - -
Vra7g2694 933 Gene3D - 249 324 - -
Vra7g2694 933 Gene3D - 554 628 - -
Vra7g2694 933 Gene3D - 857 933 - -
Vra7g2694 933 Gene3D - 629 704 - -
Vra7g2694 933 Gene3D - 17 96 - -
Vra7g2694 933 Gene3D - 401 476 - -
Vra7g2694 933 Gene3D - 477 553 - -
Vra7g2694 933 Gene3D - 781 856 - -
Vra7g2694 933 Gene3D - 705 780 - -
Vra7g2694 933 CDD Ubl_ubiquitin 705 780 - -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 781 856 IPR000626 GO:0005515
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 705 780 IPR000626 GO:0005515
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 731 756 IPR019954 -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 857 932 IPR000626 GO:0005515
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 351 376 IPR019954 -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 477 552 IPR000626 GO:0005515
Vra7g2694 933 CDD Ubl_ubiquitin 173 248 - -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 401 476 IPR000626 GO:0005515
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 248 324 IPR029071 -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 629 704 IPR000626 GO:0005515
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 553 628 IPR000626 GO:0005515
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 579 604 IPR019954 -
Vra7g2694 933 SUPERFAMILY Ubiquitin-like 627 704 IPR029071 -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 173 248 IPR000626 GO:0005515
Vra7g2694 933 PANTHER UBIQUITIN 13 685 910 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 476 683 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 172 378 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 9 227 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 225 454 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 305 531 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 96 303 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 608 835 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 531 759 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 833 932 - -
Vra7g2694 933 PANTHER UBIQUITIN 13 377 606 - -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 325 400 IPR000626 GO:0005515
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 807 832 IPR019954 -
Vra7g2694 933 ProSiteProfiles Ubiquitin domain profile. 21 96 IPR000626 GO:0005515
Vra7g2694 933 CDD Ubl_ubiquitin 629 704 - -
Vra7g2694 933 Pfam Ubiquitin family 479 550 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 783 854 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 707 778 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 403 474 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 327 398 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 99 170 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 175 246 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 251 322 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 555 626 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 631 702 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Vra7g2694 933 Pfam Ubiquitin family 859 930 IPR000626 GO:0005515
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 47 72 IPR019954 -
Vra7g2694 933 CDD Ubl_ubiquitin 249 324 - -
Vra7g2694 933 ProSitePatterns Ubiquitin domain signature. 275 300 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2694 Vra-Chr7 47179003 47192931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2694 21 97 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.58e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2694 K08770 - cit:102627936 1746.48