Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2676 ATGGCTGGTGTGAACACCCTCCCAGGAGAAGGGTGGAAGCTTTATCCTTCTTCTGCTATGGAGATTGCTCTTGACAGTGTTGATGGAAGGAGTGAGAACATGGAGGTCCACAACACCATAACTGATGATGTCTGTGTGCATTTTTCTGCTACCAGGCCAGTGGCAGTGCCATCATCTGGACAGATCAAAGTGATTCCAAATCCAACCAAGTTTACCATCCTCTATAAGGGGAACATGTGTGTTTATGAAGGAATTCCCGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGAGGGGTCCCTTGGACTTCACTCATTTCAAAAACTCCTTCTTCTCTACTTGGAAACACTACTGATTCTGCAAAGAAGAGTTCCATTCGAAGGCTGCAAGATGAATTTCCTCTAGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAACAAAGCACCTTACGCCTCAAGTAAAAACATGGCTAACAACATAGAGAACAACTTCTGCTCTGAAATGTCATTTTGGTTCCTTGAACTATCAAAAGAGGAATTTCAGCCCAGTGTTGTCGCCTCTTTAAGGAAACATGTGTTGGTTCTGCTCTATGGAAGTAGAAACTAA 660 0.4333 MAGVNTLPGEGWKLYPSSAMEIALDSVDGRSENMEVHNTITDDVCVHFSATRPVAVPSSGQIKVIPNPTKFTILYKGNMCVYEGIPAEKVREIMLIASVSAKSAEMKRGVPWTSLISKTPSSLLGNTTDSAKKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKAPYASSKNMANNIENNFCSEMSFWFLELSKEEFQPSVVASLRKHVLVLLYGSRN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2676 219 SMART tify_2 64 99 IPR010399 -
Vra7g2676 219 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Vra7g2676 219 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 185 IPR040390 -
Vra7g2676 219 PANTHER DIVERGENT CCT MOTIF PROTEIN 1 185 - -
Vra7g2676 219 Pfam Jas motif 144 168 IPR018467 -
Vra7g2676 219 Pfam tify domain 66 98 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2676 Vra-Chr7 47033045 47035455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2676 68 171 Tify Gene Family AT5G20900 41.739 1.41e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra7g2676 tify 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2676 K13464 - gmx:100306282 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2676 7 47033045 47035455 Vra5g0210 5 1769326 1773248 PCT