Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2674 ATGGGCTTCTACATCGAAGACCCTCTCTCCTGCTTCACAATAGGCCAGGCCATATACGAGGCTGCTCTCATTATTGCACTTCTCAGATGCCTTTTCTGCTTCCTCTTCAGACTCATCAACAACGACACAACCACAACCTCTCAAGACACCCCACCTCAATCCTCTCCTCAGACCACCACCACCCTTTTGCTCACCACCTTCGGAGACATTAAGGACAGGCTCCCACAGACCGAGGACACCTGTGCGGTTTGCCTCAGCCAGCTTCAGGTCCAGGACGAGGTTCGGGAGCTCATCAACTGTTACCACGTCTTCCACAGAGACTGCATAGACAGATGGCTGGAGCACGAGCACGACAATCACAACCCCACCTGTCCACTCTGCAGAGCCCCTTTGCTCAGTTCTTCCTGCCACCACTACTCCGCCGCTTGTCAGCCTCCTCCTCAGCCTAGTTGGGCTGTTGAGAGACTTCTCTATCTCTTCGGCGATGATTTGCTACCTTGCTAG 504 0.5397 MGFYIEDPLSCFTIGQAIYEAALIIALLRCLFCFLFRLINNDTTTTSQDTPPQSSPQTTTTLLLTTFGDIKDRLPQTEDTCAVCLSQLQVQDEVRELINCYHVFHRDCIDRWLEHEHDNHNPTCPLCRAPLLSSSCHHYSAACQPPPQPSWAVERLLYLFGDDLLPC* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2674 167 Pfam Ring finger domain 79 128 IPR001841 -
Vra7g2674 167 SUPERFAMILY RING/U-box 76 133 - -
Vra7g2674 167 ProSiteProfiles Zinc finger RING-type profile. 81 128 IPR001841 -
Vra7g2674 167 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 166 - -
Vra7g2674 167 SMART ring_2 81 127 IPR001841 -
Vra7g2674 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 166 - -
Vra7g2674 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2674 Vra-Chr7 47005626 47006469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2674 1 164 C3H Transcription Factor Family AT5G20885 45.856 1.23e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2674 K16281 - gmx:100306203 239.965