Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2669 ATGGCTGTTTCTCCAGTTAGATATCGTTCCACCCTCGCATGCTCCTTCTGCTGCCTTTTCTTTCTGGCACTTTGCTCCCCTCTCACCGCCGCCACAGATTTCGCCGGTTCAGCGTGCCTCGGGGTCTCCCCGACCCAGTTCGCCGGCTCACTCACTCAAGTAATCACCGCCATCAAACAACTCGCGTCCATTCTCTCACGCTTCTCCATGCCATTCGCCGATTTCCGCCTCGCCACTGCCATCGCCGACTGCCTCGACTTGTTCGACATCTCCTCCGACGTTCTCTCCTGGGCCCTCTCCGCCTCTCAGAACCCCAAAGGGAAGCATAACAGCACGGGGAACCTGAGCTCCGATTTGAGGACATGGCTAAGTGCGGTACTTTCACATCCACAAACTTGCATGGAGGGATTCGAAGGGACGAACGGCATTGTGAAGAGTTTGGTATCCGCTGGCATCGGCGAAGTGGTATCGTTGGTGGAGCAGCTTCTTGCGCAGGTGGTGCCCGTAAACGATGAATTTGAAGCCAGCCAGGAGCAATTTCCTTCGTGGATTAAACCCAGGGAAAGGAAGCTTCTGCAATCGATTGGAGTGACTCCTGATGTTGTGGTAGCTTTGGATGGGAGTGGGAACTACGCTAGAATCATGGATGCGGTGCTCGCGGCACCTGATTATAGCATGAAACGATTTGTGATTTACATAAAGAAAGGTGTTTATTTTGAGAACGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGATGGGATGGGCGCCACTGTGATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACCTTCCGCTCATCTACATTCGCTGTGAGTGGCAGAGGGTTCATAGCAAGAGACGTTTCCTTTCAGAACACGGCAGGGCCTGAGAAGCACCAAGCAGTGGCGCTGAGATCAGACTCAGATCTCTCTGTGTTCTACCGATGTGGGATTTTCGGTTTCCAAGACAGCCTATACACCCACACCATGCGCCAATTCTTCAGAGAATGCACAATAACAGGCACGGTGGACTTCATCTTCGGCGACGCCACCGCCGTCTTCCAGAACTGCTTAATACAACCGAAGAAGGGCTTGCCAAATCAGAAGAACACGATCACAGCACACGGTAGAAAAGACCCAAATGAGCCAACGGGTTTCTCATTCCAGTTCTGCAACATCACTGCATATTCCGACCTTGCACCCGTCGTCAACACCACTCAAACGTATCTGGGCAGACCCTGGAAGACTTACTCACGAACCGTTTTCATGCAATCGTTCATGAGTGAGGTGATAAGGGCAGAGGGGTGGTTGGAGTGGAATGGAAACTTTGCTTTGGATACATTGTATTATGCAGAGTACCTGAACACTGGGGCAGGTGCTGGCGTGGCGAACCGTGTGAAATGGACAGGCTACCATGCATTCAATGATTCAAGCCAGGTGAGTAACTTCACGGTGGCTCAGTTTATTGAGGGGAATCTCTGGTTGCCTTCCACTGGAGTAACCTACACTGCTGCATTCAAACCTTAA 1542 0.5156 MAVSPVRYRSTLACSFCCLFFLALCSPLTAATDFAGSACLGVSPTQFAGSLTQVITAIKQLASILSRFSMPFADFRLATAIADCLDLFDISSDVLSWALSASQNPKGKHNSTGNLSSDLRTWLSAVLSHPQTCMEGFEGTNGIVKSLVSAGIGEVVSLVEQLLAQVVPVNDEFEASQEQFPSWIKPRERKLLQSIGVTPDVVVALDGSGNYARIMDAVLAAPDYSMKRFVIYIKKGVYFENVEIKKKKWNIMMIGDGMGATVISGNRSFIDGWTTFRSSTFAVSGRGFIARDVSFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGFQDSLYTHTMRQFFRECTITGTVDFIFGDATAVFQNCLIQPKKGLPNQKNTITAHGRKDPNEPTGFSFQFCNITAYSDLAPVVNTTQTYLGRPWKTYSRTVFMQSFMSEVIRAEGWLEWNGNFALDTLYYAEYLNTGAGAGVANRVKWTGYHAFNDSSQVSNFTVAQFIEGNLWLPSTGVTYTAAFKP* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2669 513 PANTHER PECTINESTERASE 43 510 - -
Vra7g2669 513 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 43 510 - -
Vra7g2669 513 CDD PMEI-like_4 14 170 - -
Vra7g2669 513 Pfam Plant invertase/pectin methylesterase inhibitor 52 149 IPR006501 GO:0004857
Vra7g2669 513 SMART PMEI_2 30 165 IPR006501 GO:0004857
Vra7g2669 513 Gene3D - 194 511 IPR012334 -
Vra7g2669 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 162 IPR035513 -
Vra7g2669 513 Pfam Pectinesterase 200 497 IPR000070 GO:0030599|GO:0042545
Vra7g2669 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 167 IPR035513 -
Vra7g2669 513 SUPERFAMILY Pectin lyase-like 196 508 IPR011050 -
Vra7g2669 513 ProSitePatterns Pectinesterase signature 2. 344 353 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2669 Vra-Chr7 46937837 46941908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2669 16 511 Carbohydrate Esterase AT3G43270 61.014 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2669 K01051 - gmx:100814987 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2669 7 46937837 46941908 Vra5g0213 5 1828967 1830873 PCT