Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2668 ATGTTCACCAACTGCCTTATTTATCACGAGTCAAAAACTGAAACTCGTCATCTCCAAGTTTCATTTTATCAGCCTCTCTCTTCTTACTGTTCCTGTAATAGTAATTTCATGGCTATTCCTAAACTTTTCCTCCTTCTTTTAGCACACTTCTTCTCACATGCCATAGCTGTTAAGTCCTCCTCGAATGCTTTCACAATCCCGACATTCCATGCAATGCACTCTTCCTTAAATAGAACAAACTTATTTCATGAAGTCAGCTTCGATTCATCTAAGCTTTCCATCTCAATAAACATAAATCCAAACATCATCAACACCCTCCTTCAGTCCCTCCAAGCAGCAATATCTGATGCCACAAAACTATCTGATCTATTAAACAATGCAGGACACTCAAGCATCATAGAGAACAAAATAGGAGCAGTCCAAGACTGTAGAGAACTTCAACAATCCACCTTAGCTTCTTTAGAACGATCGCTATCAGGGATCCGTTCCCAAGACTCCAGAAAAGTAGTTGATGCAAGAACCTACCTCAGTGCAGCCCTCACCAACAAACGCACGTGTCTAGAGAGCTTAGATTCTGCTTCGGGTACCCTTAAGCCAGTTCTGGTGAATTCTGTGATCAACTCTTACAAGCATGTCAGTGACTCTCTTTCAATGCTCCCTAAGCCTGAGAAGAAGGCTTCCCAAGGACACAAGAACCGGCGTTTGTTGTGGCTGTCAAGGGCAAACCACCGCCTCTTGGAAGGCAATGATGGGGTGCTTGTTGTAGCTGCAGATGGAACGGGGAAGTTTAGCACCATCACCGAGGCTATCAACTTTGCTCCAAACAACAGCGTTGGTAGGACAGTAATCTATGTCAAAGAAGGGACTTACGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAATATTGTTCTGCTTGGCGATGGAAAGGATGTCACTTTAATCACTGGCAGCAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTCTGGCGGTCTCTGGAGAGGGTTTTCTTGCACGTGATATTGCTTTTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTGAGAGTGAATGCAGACTTCACTGCTTTCTACAGGTGTGCCATGTATGGTTACCAAGACACTCTCTATGTTCACTCCTTTAGACAGTTCTACAGAGAGTGTGACATTTTTGGGACCATAGATTACATATTTGGGAATGCAGCGGTGGTTTTTCAAGCATGCAACATTGTGTCCAGAATGCCAATGGCAGGTCAATTCACTGTCATTACTGCACAGTCCAGAGACTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGCTCCATTCTAGCTACCACAGACTTGTATTCGGATTCTGGTAGTGTGAAAAGCTACCTAGGAAGACCATGGAGGGTTTATTCTCGTACCGTGTATCTTGAGTCCTACATTGATGCATTTATTGAGGCAGAGGGGTGGACCCAGTGGTCTAATGATGAAGGCTTGGACACTTTGTATTATGGAGAGTATGCCAACTATGGGCCTGGTTCAGGGACAGATAACAGAGTAGATTGGGCTGGGTACCATTTAATGGATTACGACAGTGCCTACAACTTCTCAGTTTCGGAATTTATCATTGGTGACGCTTGGCTTGGGTCTACATCATTCCCTTATGACAATGGGATTTAA 1689 0.4417 MFTNCLIYHESKTETRHLQVSFYQPLSSYCSCNSNFMAIPKLFLLLLAHFFSHAIAVKSSSNAFTIPTFHAMHSSLNRTNLFHEVSFDSSKLSISININPNIINTLLQSLQAAISDATKLSDLLNNAGHSSIIENKIGAVQDCRELQQSTLASLERSLSGIRSQDSRKVVDARTYLSAALTNKRTCLESLDSASGTLKPVLVNSVINSYKHVSDSLSMLPKPEKKASQGHKNRRLLWLSRANHRLLEGNDGVLVVAADGTGKFSTITEAINFAPNNSVGRTVIYVKEGTYEENVEIPSYKTNIVLLGDGKDVTLITGSRSVIDGWTTFRSATLAVSGEGFLARDIAFENKAGPEKHQAVALRVNADFTAFYRCAMYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVFQACNIVSRMPMAGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSDSGSVKSYLGRPWRVYSRTVYLESYIDAFIEAEGWTQWSNDEGLDTLYYGEYANYGPGSGTDNRVDWAGYHLMDYDSAYNFSVSEFIIGDAWLGSTSFPYDNGI* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2668 562 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Vra7g2668 562 Gene3D - 250 562 IPR012334 -
Vra7g2668 562 PANTHER PECTINESTERASE 40 561 - -
Vra7g2668 562 Pfam Plant invertase/pectin methylesterase inhibitor 109 218 IPR006501 GO:0004857
Vra7g2668 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 101 219 IPR035513 -
Vra7g2668 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 87 221 IPR035513 -
Vra7g2668 562 SUPERFAMILY Pectin lyase-like 251 559 IPR011050 -
Vra7g2668 562 ProSitePatterns Pectinesterase signature 2. 396 405 IPR033131 -
Vra7g2668 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 101 219 IPR006501 GO:0004857
Vra7g2668 562 SMART PMEI_2 91 218 IPR006501 GO:0004857
Vra7g2668 562 CDD PMEI-like_3 106 224 - -
Vra7g2668 562 PANTHER PECTINESTERASE 40 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2668 Vra-Chr7 46934121 46936408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2668 74 562 Carbohydrate Esterase AT2G26440 65.098 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2668 - K01051 pvu:PHAVU_003G126600g 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2668 7 46934121 46936408 Vra7g2668 7 46934121 46936408 ECH
Vra7g2668 7 46934121 46936408 Vra5g0215 5 1843629 1845706 PCT