Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2643 ATGAAGGTTCCATCCAATGGTTTCTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTGTACTTCCCCCAAGGACACAGCGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGAATTCATTCCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTGGCGTTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGTCAACCTACTGAGTTCTTCTGCAAAACACTTACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTTTGGACTATTCAATGCAGCCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCATGATAATACATGGCCATTTAGACATATTTATAGAGGACAACCAAAGAGGCATCTATTAACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGCTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAACCGGCACTCTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTACAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAATCTGGAGTACGCAGATATATGGGGACAATAACTGGGATCAGCGACTTGGATCCTGTCCGATGGAAAAACTCACAATGGCGAAACATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCCAGTAGAGTTTCAATTTGGGAAATTGAACCAGTTGTTACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGAAGAGGAGTCGGATATGGAAAATGCTTTCAAGAGAGGTATGCCCTGGCATGGAGAGGAGTTTGGCCTGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTTCAGTGGATGAGCATGCAACCGAATAATCAACTCTCAGCTGCTCAATCAGGATGTTTCCCATCCATGTTTCCATCTAATACTCTTCAGGGTAACCTTGGCACCGAAGACCCATCCAAATTATTGAGCTTTCAACCTCCTGTTCTCTCTTCCCCAACTCTTCAATTAAACAAACCCAATCTGCCAAATCAAATCAACCAGTTGCAACAGTCCCAAGTGTCATGGCCTCAGCAGCAACAGTTGCAGCAACAACAGCAACAGTTGCAACAACAGCAACAGTTGCAGCAACAGCAGCAGCAACAGCAGCAGCTGCAGCAACAACAACAGCTGCAGCAACAGCAGCAGCAGCAACTACAGTCATTGTTGCAAATACCAATGAACCATCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGCCATTGCTTCAGCAAATGCCTCAACAGCTAGGACAGCAGCCCCAGAAACCGCAACAGCCAAGTCAGCATCCTACTCTTATGAATAATGGGGTAGTTTCTTCTAACCAGATTACAGGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAGCAACAATTACTCTCAGGAGGTATCCAAACCCAGCAAGGTATCCAGTCGGCTAGTAAGAATACGTTCCCATTGACATCCTTACCACATGACTCGCAATTCCAGCAACAGTTAGACCAGCAAGCTAACCTCTTACTGAGACAACAGCAACAACAACAGACGCAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGATTGCATCACAACAACAACCGCCTGCTACTCAAATGTTACAGCAAAATTCCTCAGAGCAACAACTCCACCTACAGTTGCTACAGAAATTGCAGCACCAACAACAGCAAATTCTTTCTACGTCCACCCCACTATTGCAGTCTCAGCTCCTACCACAACAAAATTCTCACCAACAAAACCAGCAATTACCACTGCCGCCACCACCTGTATCACATCATCAGCCTCAACAGCTTGCCAATAATGTATGTTCAACAGAGAAGCTTCTCAACAGCAACAACTTCAGTTCTTCATCTCTTATGCAATCACAACAGAATCCTATGAGCCAATCCCAGAATACACAGAAATCACTTACCACCACCAGAGCTCCCTCTACACTAACAGATGGTGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTGTCTCCTCCAAACCTCCTGAAAAGAAATCAGCAACTACAGGCACCATTAGGGGGGAGTTTGATAGTTGAGCCCACTAGTAATCTGTTACAGGATCTTCACAGTAAGCCTGACATGCAGAACAAACATGAGTTGCTCAATCTAAAAGGACCTGACCAGTTGAAGTATAAAGGGGCATTCACCGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACCATGCTTTTAAGGGGATATGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCGAACTTGCCTTTCAAGCCCGGTTGCTCAAGTGATGTTGTCATCAACGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGGCAACCAACCTCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCACATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTGGGTGGCAATGTTCCAATCCCTAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTACAGCAGAATAGCCAGCTAG 3453 0.4506 MKVPSNGFLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETEFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPEEESDMENAFKRGMPWHGEEFGLKDASSSIFPGFSLVQWMSMQPNNQLSAAQSGCFPSMFPSNTLQGNLGTEDPSKLLSFQPPVLSSPTLQLNKPNLPNQINQLQQSQVSWPQQQQLQQQQQQLQQQQQLQQQQQQQQQLQQQQQLQQQQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQMPQQLGQQPQKPQQPSQHPTLMNNGVVSSNQITGQFVQPPMAYGQLQQQQLLSGGIQTQQGIQSASKNTFPLTSLPHDSQFQQQLDQQANLLLRQQQQQQTQLQQSPLQLLQQNLPQIASQQQPPATQMLQQNSSEQQLHLQLLQKLQHQQQQILSTSTPLLQSQLLPQQNSHQQNQQLPLPPPPVSHHQPQQLANNVCSTEKLLNSNNFSSSSLMQSQQNPMSQSQNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQLQAPLGGSLIVEPTSNLLQDLHSKPDMQNKHELLNLKGPDQLKYKGAFTDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNLPFKPGCSSDVVINETGVLNNSGLRGNQPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNRYSRIAS* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2643 1150 PANTHER AUXIN RESPONSE FACTOR 19 1 1132 - -
Vra7g2643 1150 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Vra7g2643 1150 CDD B3_DNA 125 226 IPR003340 GO:0003677
Vra7g2643 1150 Pfam AUX/IAA family 1015 1103 IPR033389 -
Vra7g2643 1150 Coils Coil 494 540 - -
Vra7g2643 1150 MobiDBLite consensus disorder prediction 567 590 - -
Vra7g2643 1150 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Vra7g2643 1150 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Vra7g2643 1150 ProSiteProfiles PB1 domain profile. 1017 1100 IPR000270 GO:0005515
Vra7g2643 1150 SUPERFAMILY CAD & PB1 domains 1030 1095 - -
Vra7g2643 1150 Gene3D - 1013 1105 - -
Vra7g2643 1150 Gene3D - 123 227 IPR015300 -
Vra7g2643 1150 SMART B3_2 126 228 IPR003340 GO:0003677
Vra7g2643 1150 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra7g2643 1150 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1132 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra7g2643 1150 MobiDBLite consensus disorder prediction 776 828 - -
Vra7g2643 1150 MobiDBLite consensus disorder prediction 732 757 - -
Vra7g2643 1150 Gene3D - 289 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2643 Vra-Chr7 46651114 46658235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2643 1 486 B3 DNA Binding Superfamily AT5G20730 80.000 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra7g2643 AUX_IAA 4.6e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2643 - K14486 gmx:100816054 1640.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2643 7 46651114 46658235 Vra7g2643 7 46651114 46658235 ECH
Vra7g2643 7 46651114 46658235 Vra5g0237 5 2123290 2130589 PCT