Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2642 ATGGCAACCTCACAAGTCACTGCATCATTGAGGAATTTGTCTACATTTGAAAGGTTTCAAACCTCAACGCTTCGATTTCCTTCTGTTGGGCACGTGAGAATTGCCACTCTCAGGCAAAACTCGTTTCCTTCCCTTGTTGTCAAAGCTGCCACTGTTGTCGCCCCCAAGCACACCACTGTTAGCCCTCTGGGTGACAGAGTACTTGTAAAAACTAAGGATGCTGAGGAGAAGACTGCAGGTGGGATTTTACTGCCAGCAACTGCTCAAAACAAACCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGAAAGTCGGTTGGGAAGAACAAAGTGGATATTAGTGTAAAGACTGGTGCAAAGGTTATGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCTAAGCATCTTATACTTAAGGACGATGACATCATTGGTATCCTTGAAACTGATGAGGTCAAGGATCTTAAACCCTTGAACGATAGAGTCTTGATAAAGGTTGCTGATGCTGAAGAAAAAACTGCTGGAGGTTTGTTGCTTACGGAGGCAACCAAGGAGAAACCATCTATTGGAACGGTGATAGCAGTTGGTCCGGGACCTCTGGACGAGGAAGGTAACAGAAAACCATTGTCCATCATACCTGGGAATACTGTCCTGTACTCCAAATATGCGGGGAATGACTTCAAGGGAAAAGATGATTCTAACTACATTGCTTTGAGGGCTTCAGAAGTCATGGCTATCTTGTCTTAG 756 0.4497 MATSQVTASLRNLSTFERFQTSTLRFPSVGHVRIATLRQNSFPSLVVKAATVVAPKHTTVSPLGDRVLVKTKDAEEKTAGGILLPATAQNKPQGGEVVAVGEGKSVGKNKVDISVKTGAKVMYSKYAGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVADAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSIIPGNTVLYSKYAGNDFKGKDDSNYIALRASEVMAILS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2642 251 SUPERFAMILY GroES-like 58 151 IPR011032 -
Vra7g2642 251 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 ProSitePatterns Chaperonins cpn10 signature. 158 182 IPR018369 GO:0005524|GO:0006457
Vra7g2642 251 Gene3D GroES chaperonin 53 152 IPR037124 GO:0006457
Vra7g2642 251 Gene3D GroES chaperonin 153 251 IPR037124 GO:0006457
Vra7g2642 251 CDD cpn10 158 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 SUPERFAMILY GroES-like 157 250 IPR011032 -
Vra7g2642 251 Pfam Chaperonin 10 Kd subunit 158 249 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 SMART Cpn10_2 157 250 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 Hamap Co-chaperonin GroES [groES]. 157 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 CDD cpn10 62 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 PANTHER GROES CHAPERONIN 1 251 - -
Vra7g2642 251 PIRSF Cpn21 1 251 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vra7g2642 251 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0140662
Vra7g2642 251 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2642 Vra-Chr7 46648540 46650840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2642 1 251 Calmodulin-binding Proteins AT5G20720 72.112 1.63e-129 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2642 K04078 - gmx:100804915 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2642 7 46648540 46650840 Vra7g2642 7 46648540 46650840 ECH
Vra7g2642 7 46648540 46650840 Vra5g0238 5 2131994 2134895 PCT