Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2639 ATGTCCACCTCCTCGGAGTATTCAGGATTTTCCGGTAACCGCCCGGCCAAGATGACGCCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTCTATTGAGTCAATACCTCAAGGAAAAGGGTACCTTCGGAGACCTTACTCTTGGGATTACACGCACCGTCGAAGCAAACGGTTCTTCTTCTGAAGCATCGTGTCAACCTCCAACGACCATGGAGTTGTTTCCCACCATCTTGACCCAAAGGAACCTTTCTGTTGTGGATTTCTTCTCTTCGGAGCCTGCTTATCCTTACCAATCAGAGCTTCCAACTTTTGTGAATATGTCAAGTGGTTTCAAGTCTGTGGAAAAGGAGCCTAAATCTGCTCCGTTGACAATCTTTTATGCTGGACAAGTGATTGTGTTTGATGATTTTCCCCCTGAAAAAATGGAGGAGATAATGGCACTGGCAAGCAAGGGAATGTCCCAAAGCCCAAACTACCAGGCATATGCTCACTCTAGAAACCAGCAAGGAAATCATACTTCCTTTGTTGCTAATGTCCCTCAACCATCTCCCATACCAACCGTTCGAGATCTTCCAATTGCGAGGAAAGTTTCACTTCATCGGTTCTTCGAGAAGAGAAAACACAGAATTTCTGCCAATGCGCCATATCAAATAAACAATCTCAACCATGTTTCAAATAAGCATGCCGCAGAATCCATTCCATGGCTTGGATTTGGTGTTCCATCAAAATAA 729 0.4513 MSTSSEYSGFSGNRPAKMTPEKSTFSQTCSLLSQYLKEKGTFGDLTLGITRTVEANGSSSEASCQPPTTMELFPTILTQRNLSVVDFFSSEPAYPYQSELPTFVNMSSGFKSVEKEPKSAPLTIFYAGQVIVFDDFPPEKMEEIMALASKGMSQSPNYQAYAHSRNQQGNHTSFVANVPQPSPIPTVRDLPIARKVSLHRFFEKRKHRISANAPYQINNLNHVSNKHAAESIPWLGFGVPSK* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2639 242 Pfam Jas motif 191 216 IPR018467 -
Vra7g2639 242 SMART tify_2 115 150 IPR010399 -
Vra7g2639 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 237 IPR040390 -
Vra7g2639 242 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g2639 242 Pfam tify domain 116 149 IPR010399 -
Vra7g2639 242 PANTHER PROTEIN TIFY 10A 20 237 - -
Vra7g2639 242 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2639 Vra-Chr7 46622030 46624009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2639 1 239 Tify Gene Family AT1G19180 41.923 3.63e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra7g2639 tify 1.2e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2639 7 46622030 46624009 Vra7g2639 7 46622030 46624009 ECH
Vra7g2639 7 46622030 46624009 Vra5g0242 5 2200104 2202555 PCT