Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2626 ATGACAATCGGATGGGGTTCGATCTTCTCTAGTTGTTTCAGGAGTGAGTCTGTCTCTCCTTCTCCCAAGCCCACCACCAAAGAGGTGGCTACAAAGGGTGGCTCTTCTTCCAACAGGGTCTCCATCATGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTCTCTGTTTCTTTAGTGGGGTCTAACCTCCATGTTTTTTCACTCGCCGAGCTCAAGATCATCACACAGAGTTTCTCTTCGAGTAACTTTTTAGGAGAAGGAGGTTTTGGACCTGTGCACAAGGGCTTCATTGATGACAAGCTTAGGCCTGGCCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCACAAGGAGTGGTTGACGGAAGTTGTGTTTCTGGGTCAACTAAGGCATCAACATCTGGTGAAGTTGATTGGATATTGCTGTGAAGAAGAACATAGGCTTCTGGTATATGAATATCTACCACGAGGCAGCTTAGAGAATCAACTGTTTAGAAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCGGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATTTTGTTGGACTCTGACTATAATGCAAAGCTTTCTGACTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACGCACGTTTCAACCAGAGTCATGGGCACACAAGGGTATGCGGCCCCGGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTATACAGTTTTGGAGTTGTTCTCTTGGAGATTCTAACAGGAAGAAGATCAGTGGACAAAGGTCGCCCCCCAAGAGAACAAAATCTCGTGGAATGGGCCAGACCTGTTCTGAATGATTCCCGGAAACTCGGCCGAATTATGGATCCAAGACTTGAGGGACAGTATTCTGAGGTAGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCACAGGCCAAGAAGTAGACCCTTGATGAGCACTGTGGTTAGTGTTCTTGAGCCTCTTAAGGACTTCGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCAACTGATCACAATGAAATGGCAAAAGAGGTTGAAACACCCAAGGATAGGAAGAGGGAGAATGGTCATCATCAGCATCACAAGAATGGTCATAGACATCATGATCACGATGAGGCTAATAAAGATGCAAATGGTCACCATCACCACCGAAATCGTCGCCACAATAGGCCTCATCCACTTAAATCACCCAAGACACCAATTTCATCGTCAGAGTCACAGAGTAATGAACACCGAAATGCCAGAAGAAGTGGGTCAAGTTCACCTGACACCTCAATTGCATCAGAAGCACAAGGAAGCATGGGCTAG 1431 0.4654 MTIGWGSIFSSCFRSESVSPSPKPTTKEVATKGGSSSNRVSIMDLSFPGSTLSEDLSVSLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEILTGRRSVDKGRPPREQNLVEWARPVLNDSRKLGRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVSVLEPLKDFDDVPIGPFVYTVPTDHNEMAKEVETPKDRKRENGHHQHHKNGHRHHDHDEANKDANGHHHHRNRRHNRPHPLKSPKTPISSSESQSNEHRNARRSGSSSPDTSIASEAQGSMG* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2626 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vra7g2626 476 CDD STKc_IRAK 86 360 - -
Vra7g2626 476 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Vra7g2626 476 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 26 411 - -
Vra7g2626 476 PANTHER OS01G0588500 PROTEIN-RELATED 26 411 - -
Vra7g2626 476 ProSiteProfiles Protein kinase domain profile. 80 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2626 476 MobiDBLite consensus disorder prediction 14 36 - -
Vra7g2626 476 Gene3D Phosphorylase Kinase; domain 1 49 162 - -
Vra7g2626 476 MobiDBLite consensus disorder prediction 437 476 - -
Vra7g2626 476 SUPERFAMILY Protein kinase-like (PK-like) 55 358 IPR011009 -
Vra7g2626 476 MobiDBLite consensus disorder prediction 421 435 - -
Vra7g2626 476 Pfam Protein tyrosine and serine/threonine kinase 84 356 IPR001245 GO:0004672|GO:0006468
Vra7g2626 476 MobiDBLite consensus disorder prediction 379 476 - -
Vra7g2626 476 MobiDBLite consensus disorder prediction 380 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2626 Vra-Chr7 46497705 46500313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2626 66 357 Glycoside Hydrolase AT3G07070 54.237 7.41e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g2626 PK_Tyr_Ser-Thr 6.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2626 - - gmx:100799411 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2626 7 46497705 46500313 Vra9g0332 9 2725867 2728433 ECH
Vra7g2626 7 46497705 46500313 Vra7g2626 7 46497705 46500313 ECH
Vra7g2626 7 46497705 46500313 Vra5g0257 5 2358877 2361707 PCT