Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2613 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATATACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTCCCTCACCAGTCTCAGCACTTTGGGTGGAACTATTTGCCAATGGGATTGGGGAGGAAAATAGACCCTGAGCCTGGTAGATGCAGGAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCTTATCCGGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACATCACCAACGACAGCAACAACGATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCTCCAACAACTCATTCTCTCTCTCATGACACTTACCATCACCACCACCCTCAACATTCCCCCCACTCCTTCCTTTATCATCACCCCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAAGAGGTAGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACCATAAGCTCTTCTTCCTCATCAAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGTCCCAGCAAGATCAGGGTTGCTACATATCAGGAACCGGCAGTGGTATCAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCAACCACCCAGCTCTCAATTTCCATTCCCACTTCTTCCCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGATGGTTGA 1119 0.4718 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSPTTATTITDASTPTILSITKNSPALSPTTHSLSHDTYHHHHPQHSPHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQSQQDQGCYISGTGSGIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRDG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2613 372 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra7g2613 372 MobiDBLite consensus disorder prediction 146 178 - -
Vra7g2613 372 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vra7g2613 372 Pfam WRC 78 120 IPR014977 -
Vra7g2613 372 PANTHER GROWTH-REGULATING FACTOR 5 4 348 - -
Vra7g2613 372 PANTHER - 4 348 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vra7g2613 372 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra7g2613 372 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2613 Vra-Chr7 46377140 46379701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2613 7 120 GRF Transcription Factor Family AT3G13960 71.930 1.28e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vra7g2613 WRC 7.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2613 - - gmx:100783524 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2613 7 46377140 46379701 Vra7g2613 7 46377140 46379701 ECH
Vra7g2613 7 46377140 46379701 Vra5g0267 5 2469937 2472240 PCT