Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2610 ATGGGAAGAAGGCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGCTGATGAAGACAAAATCCTGACAGAATACATTACAGTCCATGGTGAAGGAAGATGGAGAAAGCTTCCCAAAAGAGCAGGTTTGAAAAGGTGTGGCAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATAACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAACCTCCTCGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTGAAAGAAAACATTGCCAATCCTAAACTAGATTCCCACCTGGTCCGTACAAAAGCCACCAAGTTCACTAAGCTGTTTTTCCCTCACCCATCAATGCTGCAACATCCCAACAAGTCCGAGGAAGAAGAAAAGGTTGTGGCGGAACTCACTACCAAGAACAACGGCTTCTTGTCGTTTCCCGATGAAGAAAAACAGCTCTCGCCAGACATGCTCACAGATTTCAACGTGGGGGATATCTGCTTGTCTGATCTTCTTCTCGACTCCGATTTCACCAATATCTGCAACAACCAGCAGTTATTCTCTTCTTGTTCGGACCAAACCAGCGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCACCGAGGAAACACCGGGACAATCATAA 738 0.4417 MGRRPCCSKEGLNRGAWTADEDKILTEYITVHGEGRWRKLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKENIANPKLDSHLVRTKATKFTKLFFPHPSMLQHPNKSEEEEKVVAELTTKNNGFLSFPDEEKQLSPDMLTDFNVGDICLSDLLLDSDFTNICNNQQLFSSCSDQTSASNNLHSFISFLDTTEETPGQS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2610 245 PANTHER MYB TRANSCRIPTION FACTOR 1 228 - -
Vra7g2610 245 SMART sant 13 63 IPR001005 -
Vra7g2610 245 SMART sant 66 114 IPR001005 -
Vra7g2610 245 CDD SANT 16 61 IPR001005 -
Vra7g2610 245 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra7g2610 245 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vra7g2610 245 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra7g2610 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra7g2610 245 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra7g2610 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra7g2610 245 Gene3D - 69 139 - -
Vra7g2610 245 CDD SANT 71 112 IPR001005 -
Vra7g2610 245 Gene3D - 14 66 - -
Vra7g2610 245 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra7g2610 245 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2610 Vra-Chr7 46352015 46354304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2610 1 116 MYB Transcription Factor Family AT5G49330 75.000 7.38e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g2610 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2610 K09422 - gmx:100802704 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2610 7 46352015 46354304 Vra9g0317 9 2555387 2556935 ECH
Vra7g2610 7 46352015 46354304 Vra7g2610 7 46352015 46354304 ECH
Vra5g0269 5 2513664 2514623 Vra7g2610 7 46352015 46354304 PCT