Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2594 ATGGTTTGGTTTCAATGCGAAGATTGTGGAGACAACCTCAAAAAACCCAAGTTGTCGAGTCACTTTCGTACTTGCTCCGCTTACAAATTGTCGTGCATTGACTGTGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACACAGTGCATTACAGAAGCTGAAAAGTATGGTCCAAAAGGCCAAGGCAAAACTTTGAGTGCTGCAACTGCCACGCCTAACAAGGATAGCAAACAGAGGCCTGAAGTTGATATTAATGTGGGTTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACATCAACTACAAGTAAGCAAACACTTCTTCTCCATGCTGACGGGAAGAAGCACAGGGCAAAGGCGAGAGCATTCCACGCTTCAAAGCAGCAACCGATCCAGGCAGATAAATCTGCTACCGATGATGCTAAGACTGTTGTGGAGAGTGGTCCTAATGACAAGGTGAGAGAGGACAGTAATGTGGAGGTCCCAAAATTGAAGGAGTCCTCTACACAAAATGACTCAAAACAAGGGAATGAAACTTCTTCAGCAAAGAAAAAGAGGAAACTTGAAGCATCGAGGGATGGGAAATCTGTTGACCTTGTTAAGAAAAGCAGGAAAGGCACTTCGGTTGACATGGGAAACGGAGAAGTAATTCAGGGTGAAAAAGCAACAGGAGAGAGCAATTTGAAGAAAGAAGGAATGTTAGAACCTTGCTGTACAATTACTGTCAATAAAATAAAATTGAAGAAATTTATCAAATCAGCCTTGAAATCTCATCCTGATGGAATTTTGAAGATGAAGAAACTTAGAAAAGTTGTCCTCAAAGCACTGCAAGAATCTGGCATTGCAGTGGATGAAGCTCACTTGAGCAAGGCGCTTGAGCAGAAGATCAATTCCAGCTCCAGATTTACAGTCGAGAACAAGTACGTGCGATTGGTGGCTAAAAACTGA 957 0.4316 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLSAATATPNKDSKQRPEVDINVGLSERPPWFCSLCNTSTTSKQTLLLHADGKKHRAKARAFHASKQQPIQADKSATDDAKTVVESGPNDKVREDSNVEVPKLKESSTQNDSKQGNETSSAKKKRKLEASRDGKSVDLVKKSRKGTSVDMGNGEVIQGEKATGESNLKKEGMLEPCCTITVNKIKLKKFIKSALKSHPDGILKMKKLRKVVLKALQESGIAVDEAHLSKALEQKINSSSRFTVENKYVRLVAKN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2594 318 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Vra7g2594 318 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Vra7g2594 318 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Vra7g2594 318 MobiDBLite consensus disorder prediction 142 165 - -
Vra7g2594 318 Pfam Zinc-finger of C2H2 type 95 119 - -
Vra7g2594 318 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 315 IPR039999 GO:0003677
Vra7g2594 318 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Vra7g2594 318 MobiDBLite consensus disorder prediction 181 208 - -
Vra7g2594 318 SUPERFAMILY beta-beta-alpha zinc fingers 84 127 IPR036236 -
Vra7g2594 318 MobiDBLite consensus disorder prediction 121 225 - -
Vra7g2594 318 Gene3D Classic Zinc Finger 89 132 - -
Vra7g2594 318 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Vra7g2594 318 MobiDBLite consensus disorder prediction 58 82 - -
Vra7g2594 318 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Vra7g2594 318 MobiDBLite consensus disorder prediction 166 180 - -
Vra7g2594 318 Gene3D - 1 50 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2594 54 234 C2H2 Transcription Factor Family AT2G19380 36.264 1.36e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2594 K15263 - gmx:100790272 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2594 7 46209910 46213332 Vra7g2594 7 46209910 46213332 ECH