Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2592 ATGAAGAAAGGAAACTTGGGGCTTGGTCTCAAACTCTCCGTTCCTGTTTCTGATCAATCAAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACGACCAGTTAACTTTGGCAGATGTAGATGTTATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTACAACATAAATGGACTAGTCAGTTTTTTGCATTGAAGGTAATTCAAATGAATATTGAGGAGTCTATGAGAAAGCAGATTGCACAAGAGTTGAAAATTAATCAACAGGCACAGTGTCCTTATGTTGTTGTCTGCTATCAATCATTTTATGAAAACGGTGTCATATCAATCATCCTAGAGTACATGGATGGGGGTTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTACCTTCACCATGAAAAGCATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTAATAAATCATACAGGAGAAGTAAAGATTACTGACTTCGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCATTGGAACTTACAACTATATGTCTCCGGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGATTAATATTGCTAGAGTGTGCTTTGGGGCGGTTTCCATATACACCAGAAGATCAAAGTGAAATTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCGTCTGGACAATTTTCTACAGAATTCTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGAATCGACTGTCAGCTCAGGAATTAATGGGACATCCTTTTGTCAGCTTGTATGATGACTTGGAGGTGAATCTTTCATCTTACTTCTCCAATGCAGGATCTCCTCTTGCTACCTTATGA 1071 0.4015 MKKGNLGLGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSQSDVEAPPPIKPTDDQLTLADVDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLRKVKTIPEPFLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHTGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPEDQSEIWESIFELIETIVDKPPPIPPSGQFSTEFCSFISACLQKDPKNRLSAQELMGHPFVSLYDDLEVNLSSYFSNAGSPLATL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2592 356 CDD PKc_MAPKK_plant_like 85 336 - -
Vra7g2592 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2592 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
Vra7g2592 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2592 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Vra7g2592 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Vra7g2592 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vra7g2592 356 PANTHER MAP KINASE KINASE 1 356 - -
Vra7g2592 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2592 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Vra7g2592 356 SUPERFAMILY Protein kinase-like (PK-like) 67 339 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2592 Vra-Chr7 46194582 46200138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2592 1 327 MAP Kinase Kinase Gene Family AT4G29810 66.964 1.05e-170 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vra7g2592 Pkinase 2.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2592 K20603 - gmx:100789734 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2592 7 46194582 46200138 Vra7g2592 7 46194582 46200138 ECH
Vra7g2592 7 46194582 46200138 Vra5g0285 5 2681194 2686145 PCT