Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2580 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTTCAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTGGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCACTGAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTGCATCGAGATATCAAACCAGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGTTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTGGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAAAAAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAAGCCCTGTGTCGTGGCTATCCAACAGAATTTGCATCTTACTTTCATTACTGCCGATCTTTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGGGACCTTTTTATACGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGTTAGCCACTCCTCCAACACGAGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTGTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCAAGTGGATCATCGAGGCGGGTTGCTGTTTCTGGTAGTCGTGATGCATTTGTTGGTACTGAGTCGGATATTCGAACTCGCACTGCTGAAGCTAGCCCTGGAGTAGCACACAGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTTGTATCATCCGGGAGAAACGCTTCTCATGTGAAAAATTATGACTCTGTACTCAGGGGCATGGAAGGTTTGCAGTTAGAGAATGATGAGAGGACCCATTATTAA 1365 0.4278 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPAVVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSGSRDAFVGTESDIRTRTAEASPGVAHRGLSGQRSSPIGSSDPKRVVSSGRNASHVKNYDSVLRGMEGLQLENDERTHY* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2580 454 PANTHER CASEIN KINASE-RELATED 1 440 - -
Vra7g2580 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2580 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vra7g2580 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2580 454 MobiDBLite consensus disorder prediction 303 346 - -
Vra7g2580 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra7g2580 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vra7g2580 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g2580 454 MobiDBLite consensus disorder prediction 303 322 - -
Vra7g2580 454 MobiDBLite consensus disorder prediction 408 428 - -
Vra7g2580 454 PANTHER CASEIN KINASE I-LIKE 1 440 - -
Vra7g2580 454 MobiDBLite consensus disorder prediction 386 428 - -
Vra7g2580 454 CDD STKc_CK1_delta_epsilon 8 282 - -
Vra7g2580 454 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2580 Vra-Chr7 46088189 46093731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2580 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.42e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vra7g2580 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2580 K02218 - gmx:100811567 871.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2580 7 46088189 46093731 Vra7g2580 7 46088189 46093731 ECH
Vra7g2580 7 46088189 46093731 Vra5g0295 5 2795055 2803530 PCT