Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2578 ATGGGAGAACAACTGCCACCACTCAAAGCAGAGATCTTTGACGACAGCGAAAGTCATCGCCACGACGACGTTTTCAGCGACAGCAAGGACTCCGGTCTGACTGAAGAGCCAACGGCGGTTCACATCAAAGAAGAACTGGATGACGGCGCCGTTAACGGTTTCATGGATAAGATGCCGAAACCTATGGAAGGCTTGCACGAGATGGGGCCCCCACCGTTCCTGAAGAAGACCTTCGATATGGTGGAGGACCCTAGGACTGACCCCGTTGTCTCATGGAGTCAAACTCGCGATAGCTTCGTCGTTTGGGACTCCCATGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGACTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAGGCATTTGCTGAAGAACATAAGGAGGAGGAGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGATGAAGCCAGGCGTGGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACTAATGCTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGGCCCGCATTTGTTGAGCAGTTAATCCAAAAGATTAGGAGGAAAAGAGAGCTTGATGGTAACGACATGGTTAAGAGGCCTAGATTGATGGGAAACCCCTGCTGTGTACCCTTCCCAAAGACCATGGAGACAACCCCTGATGTTGATTACAGACCCCAAAATCATAAACAATTCCCTTCCATGCAATCCGAGGTCGGTGGATTTCTGTCTGAAACTGTGAACATCAGCAAGATGGAGCACCCAACTCCCTCCCCCTTGGAAGATGAATTGTGTAACCCTGTGCAAGGGTCAAGGGCCCATGGTTGTTCTAGCGCAAATGCGCCAGATTCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTCTAGTTGATGAAGAATTAGATGTGAACGACTCTAATATCTATCTTGAATTGGAGGATTTGATCACTAAGCCATCGGATTGGTCTCTTGCTGCAAATGGATTGGTGGAACAAACTAGTTGA 1212 0.4761 MGEQLPPLKAEIFDDSESHRHDDVFSDSKDSGLTEEPTAVHIKEELDDGAVNGFMDKMPKPMEGLHEMGPPPFLKKTFDMVEDPRTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKRHLLKNIRRRSKYNRLHQGAFNMMKPGVEAEVEKLKKDQNILKVEILKLRQQQENSHVQLTNAQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQKIRRKRELDGNDMVKRPRLMGNPCCVPFPKTMETTPDVDYRPQNHKQFPSMQSEVGGFLSETVNISKMEHPTPSPLEDELCNPVQGSRAHGCSSANAPDSSSAYHVMSEKLMRENSLVDEELDVNDSNIYLELEDLITKPSDWSLAANGLVEQTS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2578 403 MobiDBLite consensus disorder prediction 10 36 - -
Vra7g2578 403 Gene3D - 66 163 IPR036388 -
Vra7g2578 403 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2578 403 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2578 403 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2578 403 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 52 390 IPR027725 -
Vra7g2578 403 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2578 403 MobiDBLite consensus disorder prediction 1 36 - -
Vra7g2578 403 Coils Coil 184 204 - -
Vra7g2578 403 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 52 390 - -
Vra7g2578 403 SUPERFAMILY "Winged helix" DNA-binding domain 69 162 IPR036390 -
Vra7g2578 403 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2578 403 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2578 Vra-Chr7 46073724 46076039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2578 59 391 HSF AT2G26150 42.353 9.38e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra7g2578 HSF_DNA-bind 5.3e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2578 K09419 - gmx:100818430 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2578 7 46073724 46076039 Vra7g2578 7 46073724 46076039 ECH