Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2577 ATGCTACTCCATCACCCTCTTCTCTTCTCTATAAATGGAACACAACACTTGTGTCAAAACAAACACTTCAATTCCTCAAACTCCTTCGCAACTATTCAACGCTTGCCAAAGCAAACTCACGCCTCAAACTTCAAATCTCCCAAGGGAGAACAACTGCCACCACTCAAAGCAGACATGTTCGACGAAAGCCAAAGCCATCATCACCACGACGACGTTTTCAGCGAGAGCAAGGACTCCGGAGTGACTGAAGAGGCAACGGCGGTTCACGTCAAAGAAGAGATGGATGACTGTGCCTTTAACGGTTTCATGGATAAGACCCCGAAACCGATGGAAGGCTTGCATGACATGGGACCCCCTCCGTTCCTGAAGAAGACCTTCGATATGGTGGAGGACCCTAAGACTGACCCCGTTGTCTCATGGAGTCAAACTCGCGATAGTTTCGTCGTTTGGGACTCCCATGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAGGCATTTGCTGAAAAACATAAGGAGGAGGGGCAAGTACAACAGACTGCATCAGGGAACTTTCAATATGATGAAGCCAGGCGTGGAGGCTGAATTGGAGAAACTGAAGAAGGACCAAAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACTAATGCTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGGCCCGCNTTTGTTGAGCAGTTAATCCAAAAGATTAGGAGGAAAAGAGAGCTTGATGGTAACGACATGGTTAAGAGGCCTAGATTGATGGTGAACCCCTGCTATGTACCCTTCCCAAAGACCACGGAAACAACCCCTGATGTTGATTACAGACATCAAAGTCATAAACAATTCCCTTCAATGCAATCCGAGCTCGACGGATTTCTGTCTGAAACTGTGAACATCAGCAAGATGGAGCACCCGACTCCCTCTCCCTTGGAAGATGAATTGTGTAACCCTGTGCAAGGGTCAAGGGCCCATGGTTGTTCTAGCGCAAATGCGCCAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTGTAGTTGACGAAGAACTAGATGTGAATGACTCTAATATCTATCTTGAATTGGAGGATTTGATCACTAAGCCATCGGATTGGTCTCTTGGATCTGCAAATGGATTGGTGGAACAAACTAGTTGA 1359 0.4628 MLLHHPLLFSINGTQHLCQNKHFNSSNSFATIQRLPKQTHASNFKSPKGEQLPPLKADMFDESQSHHHHDDVFSESKDSGVTEEATAVHVKEEMDDCAFNGFMDKTPKPMEGLHDMGPPPFLKKTFDMVEDPKTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKRHLLKNIRRRGKYNRLHQGTFNMMKPGVEAELEKLKKDQNILKVEILKLRQQQENSHVQLTNAQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQKIRRKRELDGNDMVKRPRLMVNPCYVPFPKTTETTPDVDYRHQSHKQFPSMQSELDGFLSETVNISKMEHPTPSPLEDELCNPVQGSRAHGCSSANAPDASSAYHVMSEKLMRENSVVDEELDVNDSNIYLELEDLITKPSDWSLGSANGLVEQTS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2577 452 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 100 436 - -
Vra7g2577 452 ProSitePatterns HSF-type DNA-binding domain signature. 160 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2577 452 SUPERFAMILY "Winged helix" DNA-binding domain 117 210 IPR036390 -
Vra7g2577 452 Coils Coil 232 252 - -
Vra7g2577 452 Gene3D - 114 211 IPR036388 -
Vra7g2577 452 MobiDBLite consensus disorder prediction 61 81 - -
Vra7g2577 452 Pfam HSF-type DNA-binding 121 210 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2577 452 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 100 436 IPR027725 -
Vra7g2577 452 SMART hsfneu3 117 210 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2577 452 PRINTS Heat shock factor (HSF) domain signature 121 144 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2577 452 PRINTS Heat shock factor (HSF) domain signature 159 171 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g2577 452 PRINTS Heat shock factor (HSF) domain signature 172 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2577 Vra-Chr7 46068463 46070653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2577 107 450 HSF AT2G26150 41.026 5.20e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra7g2577 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2577 K09419 - gmx:100818430 655.981