Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2574 ATGGCTGTCTTCATGGGATGCAAAGCAGGAGAAATCGAACTTGGCTTCTCCAACATTCCTCAAGATGACATTGAGACAGCACTTCAAAATTTATTTCCAGAAGATTTCTATATGCGTTTCCAATCAATTGATCAGAATCCATATTCATCGTCATCTTCCTCTTTCATAATATCATCTACAAATACCTTTAATCAATCACTCAATATTCCGGGAACTTCCCACTCCAACTTCCCGGAAGCCCTCGGTGTGGCTCCCACACAACCCACTTCTCACCAACACAATATCCAACCATTGTCTCAAGTCATTCCATTTCCAAGCCATTTACCCACACCAGAGGGTGAACATGAAGAAATAGTAAGAGCATTAATCCGGGTCCTGTCTTCAACTTCTCAGCAGCAGCAACTCCATCAAGTTTTGCCTCATACTTCTGTAACACACCCCGGAGCTTCCGATTTCGTGAGATATATACCAGATATGACAAACCCAAATATACAACCCCACACAGAAACCAATTTTCGCAGGCAAAACCTGAATAATACATCATTAATGAGAGAACGCAATAGTACTGTTCAAGCAACTGATCACATCAGCACCCTGCAGCATCATTTTCGTATGATATCGGAGAGAAGAAGGCGTGAAAAACTCAAAGTGAGTTTTGAGGCACTTAGAGCACTCCTTCCTGCGGAAACTAAGAAAAGTAAAGCGATGATCCTGACAACCGCAAAGGAGAGAATAATATCTTTGATGGCTGACATTGAAAAGCTTAACATGAGAAAGCAGCAGCTTATGAAAGATTTGTCAGGTAATGAAAGCTTGAATGTTCGAGTTTGGCATGTACCAGAATCAAGTTCGTCAGAAGAGAAAATGGTGGACTTAGAAGTGACAGTGAGAGAACAAAGCTGCCAAGTTAATGTATCGATTCGCATATTCAAATTCTTAGAAAGGATTCAGAACTTAGGCTTGATTTCCACGAAAACAAACCTCCATACTACAGAAGGAGGGACAACCATTAATGTATTAACCTTCAGGCTCGGGATTATTGAGGTATGCATACAAAATTAG 1062 0.4087 MAVFMGCKAGEIELGFSNIPQDDIETALQNLFPEDFYMRFQSIDQNPYSSSSSSFIISSTNTFNQSLNIPGTSHSNFPEALGVAPTQPTSHQHNIQPLSQVIPFPSHLPTPEGEHEEIVRALIRVLSSTSQQQQLHQVLPHTSVTHPGASDFVRYIPDMTNPNIQPHTETNFRRQNLNNTSLMRERNSTVQATDHISTLQHHFRMISERRRREKLKVSFEALRALLPAETKKSKAMILTTAKERIISLMADIEKLNMRKQQLMKDLSGNESLNVRVWHVPESSSSEEKMVDLEVTVREQSCQVNVSIRIFKFLERIQNLGLISTKTNLHTTEGGTTINVLTFRLGIIEVCIQN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2574 353 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 346 - -
Vra7g2574 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Vra7g2574 353 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 346 IPR044658 -
Vra7g2574 353 SMART finulus 205 254 IPR011598 GO:0046983
Vra7g2574 353 Pfam Helix-loop-helix DNA-binding domain 206 248 IPR011598 GO:0046983
Vra7g2574 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 266 IPR036638 GO:0046983
Vra7g2574 353 Coils Coil 238 265 - -
Vra7g2574 353 Gene3D - 201 274 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2574 Vra-Chr7 46047827 46050061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2574 3 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 31.061 2.00e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g2574 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2574 - - vra:106766501 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2574 7 46047827 46050061 Vra5g0303 5 2853544 2857808 PCT