Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2573 ATGGCTGTCTTCATGGGATGCAAAGCGGGAGAAATCGAACTTGGCTTCTCCAACATTCCTCAAGATGACATTGAGACAGCACTTCAGAATTTATTTCCAGAAGATTTCTATATGCGTTTCCAATCAACTGATCAGAATCCATACTCATCGTCATCATCTTCTTTCATAATATCATCTACAAATACCTTTAATCAATCACTCGATGTTCCGGGAACTTCCCACTCCAACTTCCCTGATGCCCTCGGTGTGGCTCCCTCACAACCGACTTCTCACCAACACACTAGCCAACCATTGTCTCAAGTCATTCCATTTCCAAGCAATTTACCAACACCAGAGGGTGAATATCAAGAAATGGTAAGAGCATTAATCCGAGTCCTGTCTTCAACTTCTCAGCAGCAGCAACCCCATCAAGTTTTGACTCATACTTCTGTAACACACCCTGGAGCTCCCGATTTCGTGAGATATGAATCAGATTCAAATATAAACCCACACACGGAGTCCAATTTTAGCAGGCGAAACCTGCAGAATACATCATTTCCATTGCTTAAAAACTTAAATTCAAAGAGAATGAGAGAACGCGATACTATTAAACCAACCCACCCCATTAGTTCCCAGAAGTACTATCACACGATATCGGAAAGAAAACGTCGTGAAAAACTCAGTGAGTGTTTTCAGGAACTCAGCGCACTTCTTCCTCCGGGAACAAAGAAAAACAAAAGGTGGATTCTTACAGCAGCAAAGGAGACAATGAGATCTTTGATGGTTGAAATTGAAGAGCTTAAGATGAGAAATGAGCAGCTGATGAGAGTTTTGTCAGGCAAAGAAGTTGGTGGTAGTAGGGAGGAAAACAGAGGCAGGTCCTCTAATGAAAGATTGAATGTTCGGGTTTTGCATGCATCAGAATCAAGTTCATCAGAAGAGCAAATGGTGAACTTGGAAGTGACGGTGAGAGAACAAAGCAGTGAAGTTAATGTATTGGTTCGCATATTGGAATTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAAACCTCCATATTACAGAAGGAGGGACAGCCATTAATGTATTAACCTTCAGGCTGAGGATTATTAAGGGTAGTGAATGGGACGAGGTTGGGTTCGAGGAAGCAATAAGAAGAGTGGTTGCTGATGTAACACATCGTGAATTCCACCCATAA 1188 0.42 MAVFMGCKAGEIELGFSNIPQDDIETALQNLFPEDFYMRFQSTDQNPYSSSSSSFIISSTNTFNQSLDVPGTSHSNFPDALGVAPSQPTSHQHTSQPLSQVIPFPSNLPTPEGEYQEMVRALIRVLSSTSQQQQPHQVLTHTSVTHPGAPDFVRYESDSNINPHTESNFSRRNLQNTSFPLLKNLNSKRMRERDTIKPTHPISSQKYYHTISERKRREKLSECFQELSALLPPGTKKNKRWILTAAKETMRSLMVEIEELKMRNEQLMRVLSGKEVGGSREENRGRSSNERLNVRVLHASESSSSEEQMVNLEVTVREQSSEVNVLVRILEFLERVQNVTLISTNTNLHITEGGTAINVLTFRLRIIKGSEWDEVGFEEAIRRVVADVTHREFHP* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2573 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 270 IPR036638 GO:0046983
Vra7g2573 395 SMART finulus 210 259 IPR011598 GO:0046983
Vra7g2573 395 Coils Coil 243 270 - -
Vra7g2573 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Vra7g2573 395 Gene3D - 203 275 IPR036638 GO:0046983
Vra7g2573 395 MobiDBLite consensus disorder prediction 83 102 - -
Vra7g2573 395 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 388 IPR044658 -
Vra7g2573 395 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 388 - -
Vra7g2573 395 Pfam Helix-loop-helix DNA-binding domain 208 253 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2573 Vra-Chr7 46041416 46043708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2573 203 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 44.211 3.13e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g2573 HLH 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2573 - - vra:106766500 756.133