Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g2560 ATGATTCCAGCCTATCGCCACTCTTCTGTGATTCCTTTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCATTCCCACTCATCATGCTTACCCTTCTTTTTCTTATCTATCTTCACCATATCCCGTCCTCTTCAACCCTCCAGATCAAGAAGATGGATCACACTCCTGGGAACCAACAAAACACTTATCAGGTCATGAAGAGGCTGAGAAGATTAACCCTACCATGGGATCATGGGATCACTCGGTGGCACAAAGTGAGCTCAAGGTGACAGTATGCAAGCAGAAAGAGAGGAGTGAAGATCACGTAGCAGCTGCTGAGGATGGTTCGGTGAAGTTGATGCCTTCAAAGATGAGAATGATGCAGAAGATGATGGGGCCCGATCAAACTGGTGCATATATAGAAGACAGCACTGTGCATAAGTTTGAAGATGAGAAGCAACCATTATCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTGTTCAAACCACAGTAACAACACTGTTAGGGTTTGTGCTGATTGCCATACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAGAGGAAGGCGAGACGAGCCATGGCAGCTGCAGCATCGGGAAATGGAACAGTGATTTTGAAAACTGAGAAGTCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGGTAAGAACTCAGGTTGCACCACAGATGAAAAAGAAGCGCAAGCATGGAGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAGTTTGGGTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCAGGGATGA 921 0.4615 MIPAYRHSSVIPLDLNEDQNHELFIPTHHAYPSFSYLSSPYPVLFNPPDQEDGSHSWEPTKHLSGHEEAEKINPTMGSWDHSVAQSELKVTVCKQKERSEDHVAAAEDGSVKLMPSKMRMMQKMMGPDQTGAYIEDSTVHKFEDEKQPLSPLGTDNSSSNNCSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTVILKTEKSVKGNKLQKKEKKVRTQVAPQMKKKRKHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVQG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g2560 306 Gene3D - 171 209 IPR013088 GO:0006355|GO:0008270
Vra7g2560 306 SMART GATA_3 167 218 IPR000679 GO:0006355|GO:0043565
Vra7g2560 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 306 - -
Vra7g2560 306 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Vra7g2560 306 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 306 - -
Vra7g2560 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 207 - -
Vra7g2560 306 MobiDBLite consensus disorder prediction 47 68 - -
Vra7g2560 306 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Vra7g2560 306 MobiDBLite consensus disorder prediction 244 263 - -
Vra7g2560 306 MobiDBLite consensus disorder prediction 244 258 - -
Vra7g2560 306 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Vra7g2560 306 MobiDBLite consensus disorder prediction 54 68 - -
Vra7g2560 306 CDD ZnF_GATA 172 200 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g2560 Vra-Chr7 45911224 45916066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g2560 85 306 C2C2-Gata Transcription Factor Family AT4G26150 38.095 1.40e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra7g2560 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g2560 - - gmx:100810698 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2560 7 45911224 45916066 Vra7g2560 7 45911224 45916066 ECH
Vra7g2560 7 45911224 45916066 Vra5g0312 5 2994934 2997088 PCT